Gene : ATR A. thaliana TAIR10
Primary Identifier:  ? AT5G40820 Defline:  (1 of 1) K06640 - serine/threonine-protein kinase ATR (ATR)
Genomic Order:  3393 Name:  ? AT5G40820
Secondary Identifier:  ? PAC:19669133
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G40820 0.5kb upstream 0.5kb upstream 11654 true Chr5: 16342745-16354398 Arabidopsis thaliana
AT5G40820 0.5kb upstream 0.5kb upstream 500 false Chr5: 16353899-16354398 Arabidopsis thaliana
AT5G40820 0.5kb downstream 0.5kb downstream 11654 true Chr5: 16342245-16353898 Arabidopsis thaliana
AT5G40820 0.5kb downstream 0.5kb downstream 500 false Chr5: 16342245-16342744 Arabidopsis thaliana
AT5G40820 1.0kb upstream 1.0kb upstream 12154 true Chr5: 16342745-16354898 Arabidopsis thaliana
AT5G40820 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16353899-16354898 Arabidopsis thaliana
AT5G40820 1.0kb downstream 1.0kb downstream 12154 true Chr5: 16341745-16353898 Arabidopsis thaliana
AT5G40820 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16341745-16342744 Arabidopsis thaliana
AT5G40820 2.0kb upstream 2.0kb upstream 13154 true Chr5: 16342745-16355898 Arabidopsis thaliana
AT5G40820 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16353899-16355898 Arabidopsis thaliana
AT5G40820 2.0kb downstream 2.0kb downstream 13154 true Chr5: 16340745-16353898 Arabidopsis thaliana
AT5G40820 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16340745-16342744 Arabidopsis thaliana
AT5G40820 5.0kb upstream 5.0kb upstream 16154 true Chr5: 16342745-16358898 Arabidopsis thaliana
AT5G40820 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16353899-16358898 Arabidopsis thaliana
AT5G40820 5.0kb downstream 5.0kb downstream 16154 true Chr5: 16337745-16353898 Arabidopsis thaliana
AT5G40820 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16337745-16342744 Arabidopsis thaliana
AT5G40820 10.0kb upstream 10.0kb upstream 21154 true Chr5: 16342745-16363898 Arabidopsis thaliana
AT5G40820 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16353899-16363898 Arabidopsis thaliana
AT5G40820 10.0kb downstream 10.0kb downstream 21154 true Chr5: 16332745-16353898 Arabidopsis thaliana
AT5G40820 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16332745-16342744 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366633 5261 Brassicaceae View MSA
123829590 5264 Brassicales-Malvales View MSA
124339305 5266 SBM View MSA
124241595 5268 Malvidae View MSA
124068792 5270 Rosid View MSA
123737663 5271 Pentapetalae View MSA
122786169 5272 Eudicot View MSA
122044590 5273 Angiosperm View MSA
121345058 5274 Embryophyte View MSA
123426906 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.566        
cufflinks 1.537        
cufflinks 0.37       Low
cufflinks 1.607        
cufflinks 0.382       Low
cufflinks 1.573        

0 Strain