Gene : SYN2 A. thaliana TAIR10
Primary Identifier:  ? AT5G40840 Defline:  (1 of 1) PTHR12585:SF31 - SISTER CHROMATID COHESION 1 PROTEIN 2
Genomic Order:  3395 Name:  ? AT5G40840
Secondary Identifier:  ? PAC:19669176
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G40840 0.5kb upstream 0.5kb upstream 4885 true Chr5: 16359430-16364314 Arabidopsis thaliana
AT5G40840 0.5kb upstream 0.5kb upstream 500 false Chr5: 16363815-16364314 Arabidopsis thaliana
AT5G40840 0.5kb downstream 0.5kb downstream 4885 true Chr5: 16358930-16363814 Arabidopsis thaliana
AT5G40840 0.5kb downstream 0.5kb downstream 500 false Chr5: 16358930-16359429 Arabidopsis thaliana
AT5G40840 1.0kb upstream 1.0kb upstream 5385 true Chr5: 16359430-16364814 Arabidopsis thaliana
AT5G40840 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16363815-16364814 Arabidopsis thaliana
AT5G40840 1.0kb downstream 1.0kb downstream 5385 true Chr5: 16358430-16363814 Arabidopsis thaliana
AT5G40840 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16358430-16359429 Arabidopsis thaliana
AT5G40840 2.0kb upstream 2.0kb upstream 6385 true Chr5: 16359430-16365814 Arabidopsis thaliana
AT5G40840 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16363815-16365814 Arabidopsis thaliana
AT5G40840 2.0kb downstream 2.0kb downstream 6385 true Chr5: 16357430-16363814 Arabidopsis thaliana
AT5G40840 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16357430-16359429 Arabidopsis thaliana
AT5G40840 5.0kb upstream 5.0kb upstream 9385 true Chr5: 16359430-16368814 Arabidopsis thaliana
AT5G40840 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16363815-16368814 Arabidopsis thaliana
AT5G40840 5.0kb downstream 5.0kb downstream 9385 true Chr5: 16354430-16363814 Arabidopsis thaliana
AT5G40840 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16354430-16359429 Arabidopsis thaliana
AT5G40840 10.0kb upstream 10.0kb upstream 14385 true Chr5: 16359430-16373814 Arabidopsis thaliana
AT5G40840 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16363815-16373814 Arabidopsis thaliana
AT5G40840 10.0kb downstream 10.0kb downstream 14385 true Chr5: 16349430-16363814 Arabidopsis thaliana
AT5G40840 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16349430-16359429 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375239 5261 Brassicaceae View MSA
123832831 5264 Brassicales-Malvales View MSA
124344516 5266 SBM View MSA
124242230 5268 Malvidae View MSA
124069761 5270 Rosid View MSA
123746964 5271 Pentapetalae View MSA
122794410 5272 Eudicot View MSA
122048297 5273 Angiosperm View MSA
121349590 5274 Embryophyte View MSA
123426470 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.302        
cufflinks 0.907        
cufflinks 0.187     Low Low
cufflinks 0.929        
cufflinks 0.182     Low Low
cufflinks 1.137       High

0 Strain