Gene : UPM1 A. thaliana TAIR10
Primary Identifier:  ? AT5G40850 Defline:  (1 of 1) 2.1.1.107 - Uroporphyrinogen-III C-methyltransferase / Uroporphyrinogen-III methyltransferase
Genomic Order:  3397 Name:  ? AT5G40850
Secondary Identifier:  ? PAC:19668683
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G40850 0.5kb upstream 0.5kb upstream 3247 true Chr5: 16365853-16369099 Arabidopsis thaliana
AT5G40850 0.5kb upstream 0.5kb upstream 500 false Chr5: 16365853-16366352 Arabidopsis thaliana
AT5G40850 0.5kb downstream 0.5kb downstream 3247 true Chr5: 16366353-16369599 Arabidopsis thaliana
AT5G40850 0.5kb downstream 0.5kb downstream 500 false Chr5: 16369100-16369599 Arabidopsis thaliana
AT5G40850 1.0kb upstream 1.0kb upstream 3747 true Chr5: 16365353-16369099 Arabidopsis thaliana
AT5G40850 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16365353-16366352 Arabidopsis thaliana
AT5G40850 1.0kb downstream 1.0kb downstream 3747 true Chr5: 16366353-16370099 Arabidopsis thaliana
AT5G40850 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16369100-16370099 Arabidopsis thaliana
AT5G40850 2.0kb upstream 2.0kb upstream 4747 true Chr5: 16364353-16369099 Arabidopsis thaliana
AT5G40850 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16364353-16366352 Arabidopsis thaliana
AT5G40850 2.0kb downstream 2.0kb downstream 4747 true Chr5: 16366353-16371099 Arabidopsis thaliana
AT5G40850 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16369100-16371099 Arabidopsis thaliana
AT5G40850 5.0kb upstream 5.0kb upstream 7747 true Chr5: 16361353-16369099 Arabidopsis thaliana
AT5G40850 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16361353-16366352 Arabidopsis thaliana
AT5G40850 5.0kb downstream 5.0kb downstream 7747 true Chr5: 16366353-16374099 Arabidopsis thaliana
AT5G40850 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16369100-16374099 Arabidopsis thaliana
AT5G40850 10.0kb upstream 10.0kb upstream 12747 true Chr5: 16356353-16369099 Arabidopsis thaliana
AT5G40850 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16356353-16366352 Arabidopsis thaliana
AT5G40850 10.0kb downstream 10.0kb downstream 12747 true Chr5: 16366353-16379099 Arabidopsis thaliana
AT5G40850 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16369100-16379099 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369672 5261 Brassicaceae View MSA
123829840 5264 Brassicales-Malvales View MSA
124346464 5266 SBM View MSA
124238727 5268 Malvidae View MSA
124068811 5270 Rosid View MSA
123740285 5271 Pentapetalae View MSA
122785895 5272 Eudicot View MSA
122045431 5273 Angiosperm View MSA
121347676 5274 Embryophyte View MSA
123426668 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.708       High
cufflinks 7.822        
cufflinks 6.473        
cufflinks 11.649        
cufflinks 5.791       Low
cufflinks 17.131       High

0 Strain