Gene : AT5G40720 A. thaliana TAIR10
Defline:  (1 of 2) PTHR21461:SF10 - C3H4 TYPE ZINC FINGER PROTEIN-RELATED Genomic Order:  3383
Name:  ? AT5G40720 Secondary Identifier:  ? PAC:19670579
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G40720 0.5kb upstream 0.5kb upstream 2604 true Chr5: 16297398-16300001 Arabidopsis thaliana
AT5G40720 0.5kb upstream 0.5kb upstream 500 false Chr5: 16297398-16297897 Arabidopsis thaliana
AT5G40720 0.5kb downstream 0.5kb downstream 2604 true Chr5: 16297898-16300501 Arabidopsis thaliana
AT5G40720 0.5kb downstream 0.5kb downstream 500 false Chr5: 16300002-16300501 Arabidopsis thaliana
AT5G40720 1.0kb upstream 1.0kb upstream 3104 true Chr5: 16296898-16300001 Arabidopsis thaliana
AT5G40720 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16296898-16297897 Arabidopsis thaliana
AT5G40720 1.0kb downstream 1.0kb downstream 3104 true Chr5: 16297898-16301001 Arabidopsis thaliana
AT5G40720 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16300002-16301001 Arabidopsis thaliana
AT5G40720 2.0kb upstream 2.0kb upstream 4104 true Chr5: 16295898-16300001 Arabidopsis thaliana
AT5G40720 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16295898-16297897 Arabidopsis thaliana
AT5G40720 2.0kb downstream 2.0kb downstream 4104 true Chr5: 16297898-16302001 Arabidopsis thaliana
AT5G40720 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16300002-16302001 Arabidopsis thaliana
AT5G40720 5.0kb upstream 5.0kb upstream 7104 true Chr5: 16292898-16300001 Arabidopsis thaliana
AT5G40720 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16292898-16297897 Arabidopsis thaliana
AT5G40720 5.0kb downstream 5.0kb downstream 7104 true Chr5: 16297898-16305001 Arabidopsis thaliana
AT5G40720 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16300002-16305001 Arabidopsis thaliana
AT5G40720 10.0kb upstream 10.0kb upstream 12104 true Chr5: 16287898-16300001 Arabidopsis thaliana
AT5G40720 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16287898-16297897 Arabidopsis thaliana
AT5G40720 10.0kb downstream 10.0kb downstream 12104 true Chr5: 16297898-16310001 Arabidopsis thaliana
AT5G40720 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16300002-16310001 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362570 5261 Brassicaceae View MSA
123840371 5264 Brassicales-Malvales View MSA
124343880 5266 SBM View MSA
124244393 5268 Malvidae View MSA
124069004 5270 Rosid View MSA
123739785 5271 Pentapetalae View MSA
122796988 5272 Eudicot View MSA
122047525 5273 Angiosperm View MSA
123428981 5275 Viridiplantae View MSA
121349408 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.02       High
cufflinks 3.802        
cufflinks 6.391        
cufflinks 4.219        
cufflinks 10.347       High
cufflinks 2.535       Low

0 Strain