Gene : AT5G40710 A. thaliana TAIR10
Defline:  (1 of 1) PTHR21385//PTHR21385:SF2 - ZINC FINGER PROTEIN-RELATED // SUBFAMILY NOT NAMED Genomic Order:  3382
Name:  ? AT5G40710 Secondary Identifier:  ? PAC:19671337
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G40710 0.5kb upstream 0.5kb upstream 2469 true Chr5: 16294536-16297004 Arabidopsis thaliana
AT5G40710 0.5kb upstream 0.5kb upstream 500 false Chr5: 16294536-16295035 Arabidopsis thaliana
AT5G40710 0.5kb downstream 0.5kb downstream 2469 true Chr5: 16295036-16297504 Arabidopsis thaliana
AT5G40710 0.5kb downstream 0.5kb downstream 500 false Chr5: 16297005-16297504 Arabidopsis thaliana
AT5G40710 1.0kb upstream 1.0kb upstream 2969 true Chr5: 16294036-16297004 Arabidopsis thaliana
AT5G40710 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16294036-16295035 Arabidopsis thaliana
AT5G40710 1.0kb downstream 1.0kb downstream 2969 true Chr5: 16295036-16298004 Arabidopsis thaliana
AT5G40710 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16297005-16298004 Arabidopsis thaliana
AT5G40710 2.0kb upstream 2.0kb upstream 3969 true Chr5: 16293036-16297004 Arabidopsis thaliana
AT5G40710 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16293036-16295035 Arabidopsis thaliana
AT5G40710 2.0kb downstream 2.0kb downstream 3969 true Chr5: 16295036-16299004 Arabidopsis thaliana
AT5G40710 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16297005-16299004 Arabidopsis thaliana
AT5G40710 5.0kb upstream 5.0kb upstream 6969 true Chr5: 16290036-16297004 Arabidopsis thaliana
AT5G40710 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16290036-16295035 Arabidopsis thaliana
AT5G40710 5.0kb downstream 5.0kb downstream 6969 true Chr5: 16295036-16302004 Arabidopsis thaliana
AT5G40710 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16297005-16302004 Arabidopsis thaliana
AT5G40710 10.0kb upstream 10.0kb upstream 11969 true Chr5: 16285036-16297004 Arabidopsis thaliana
AT5G40710 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16285036-16295035 Arabidopsis thaliana
AT5G40710 10.0kb downstream 10.0kb downstream 11969 true Chr5: 16295036-16307004 Arabidopsis thaliana
AT5G40710 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16297005-16307004 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377021 5261 Brassicaceae View MSA
123832050 5264 Brassicales-Malvales View MSA
124336913 5266 SBM View MSA
124249740 5268 Malvidae View MSA
124069556 5270 Rosid View MSA
123738749 5271 Pentapetalae View MSA
122792091 5272 Eudicot View MSA
122042462 5273 Angiosperm View MSA
121347105 5274 Embryophyte View MSA
123424913 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.747        
cufflinks 4.689        
cufflinks 5.893        
cufflinks 5.047        
cufflinks 5.569        
cufflinks 3.941       Low

0 Strain