Gene : AT5G43960 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10693//PTHR10693:SF29 - RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN // GB|AAD20086.1 Genomic Order:  3750
Name:  ? AT5G43960 Secondary Identifier:  ? PAC:19669607
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G43960 0.5kb upstream 0.5kb upstream 3652 true Chr5: 17688788-17692439 Arabidopsis thaliana
AT5G43960 0.5kb upstream 0.5kb upstream 500 false Chr5: 17691940-17692439 Arabidopsis thaliana
AT5G43960 0.5kb downstream 0.5kb downstream 3652 true Chr5: 17688288-17691939 Arabidopsis thaliana
AT5G43960 0.5kb downstream 0.5kb downstream 500 false Chr5: 17688288-17688787 Arabidopsis thaliana
AT5G43960 1.0kb upstream 1.0kb upstream 4152 true Chr5: 17688788-17692939 Arabidopsis thaliana
AT5G43960 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17691940-17692939 Arabidopsis thaliana
AT5G43960 1.0kb downstream 1.0kb downstream 4152 true Chr5: 17687788-17691939 Arabidopsis thaliana
AT5G43960 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17687788-17688787 Arabidopsis thaliana
AT5G43960 2.0kb upstream 2.0kb upstream 5152 true Chr5: 17688788-17693939 Arabidopsis thaliana
AT5G43960 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17691940-17693939 Arabidopsis thaliana
AT5G43960 2.0kb downstream 2.0kb downstream 5152 true Chr5: 17686788-17691939 Arabidopsis thaliana
AT5G43960 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17686788-17688787 Arabidopsis thaliana
AT5G43960 5.0kb upstream 5.0kb upstream 8152 true Chr5: 17688788-17696939 Arabidopsis thaliana
AT5G43960 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17691940-17696939 Arabidopsis thaliana
AT5G43960 5.0kb downstream 5.0kb downstream 8152 true Chr5: 17683788-17691939 Arabidopsis thaliana
AT5G43960 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17683788-17688787 Arabidopsis thaliana
AT5G43960 10.0kb upstream 10.0kb upstream 13152 true Chr5: 17688788-17701939 Arabidopsis thaliana
AT5G43960 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17691940-17701939 Arabidopsis thaliana
AT5G43960 10.0kb downstream 10.0kb downstream 13152 true Chr5: 17678788-17691939 Arabidopsis thaliana
AT5G43960 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17678788-17688787 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363349 5261 Brassicaceae View MSA
123833037 5264 Brassicales-Malvales View MSA
124346315 5266 SBM View MSA
124243386 5268 Malvidae View MSA
124070794 5270 Rosid View MSA
123747329 5271 Pentapetalae View MSA
122793510 5272 Eudicot View MSA
122050704 5273 Angiosperm View MSA
121351180 5274 Embryophyte View MSA
123426443 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.195        
cufflinks 11.096        
cufflinks 9.252        
cufflinks 12.142        
cufflinks 7.294       Low
cufflinks 15.52       High

0 Strain