Gene : AT5G43950 A. thaliana TAIR10
Defline:  (1 of 4) PTHR17204//PTHR17204:SF30 - PRE-MRNA PROCESSING PROTEIN PRP39-RELATED // SUBFAMILY NOT NAMED Genomic Order:  3749
Name:  ? AT5G43950 Secondary Identifier:  ? PAC:19667861
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G43950 0.5kb upstream 0.5kb upstream 2669 true Chr5: 17686500-17689168 Arabidopsis thaliana
AT5G43950 0.5kb upstream 0.5kb upstream 500 false Chr5: 17688669-17689168 Arabidopsis thaliana
AT5G43950 0.5kb downstream 0.5kb downstream 2669 true Chr5: 17686000-17688668 Arabidopsis thaliana
AT5G43950 0.5kb downstream 0.5kb downstream 500 false Chr5: 17686000-17686499 Arabidopsis thaliana
AT5G43950 1.0kb upstream 1.0kb upstream 3169 true Chr5: 17686500-17689668 Arabidopsis thaliana
AT5G43950 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17688669-17689668 Arabidopsis thaliana
AT5G43950 1.0kb downstream 1.0kb downstream 3169 true Chr5: 17685500-17688668 Arabidopsis thaliana
AT5G43950 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17685500-17686499 Arabidopsis thaliana
AT5G43950 2.0kb upstream 2.0kb upstream 4169 true Chr5: 17686500-17690668 Arabidopsis thaliana
AT5G43950 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17688669-17690668 Arabidopsis thaliana
AT5G43950 2.0kb downstream 2.0kb downstream 4169 true Chr5: 17684500-17688668 Arabidopsis thaliana
AT5G43950 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17684500-17686499 Arabidopsis thaliana
AT5G43950 5.0kb upstream 5.0kb upstream 7169 true Chr5: 17686500-17693668 Arabidopsis thaliana
AT5G43950 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17688669-17693668 Arabidopsis thaliana
AT5G43950 5.0kb downstream 5.0kb downstream 7169 true Chr5: 17681500-17688668 Arabidopsis thaliana
AT5G43950 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17681500-17686499 Arabidopsis thaliana
AT5G43950 10.0kb upstream 10.0kb upstream 12169 true Chr5: 17686500-17698668 Arabidopsis thaliana
AT5G43950 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17688669-17698668 Arabidopsis thaliana
AT5G43950 10.0kb downstream 10.0kb downstream 12169 true Chr5: 17676500-17688668 Arabidopsis thaliana
AT5G43950 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17676500-17686499 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366440 5261 Brassicaceae View MSA
123838577 5264 Brassicales-Malvales View MSA
124349595 5266 SBM View MSA
124246914 5268 Malvidae View MSA
124072128 5270 Rosid View MSA
123746638 5271 Pentapetalae View MSA
122792580 5272 Eudicot View MSA
122047878 5273 Angiosperm View MSA
121349100 5274 Embryophyte View MSA
123426825 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.586        
cufflinks 4.758        
cufflinks 2.714       Low
cufflinks 5.077        
cufflinks 2.966        
cufflinks 5.248       High

0 Strain