Gene : CLH2 A. thaliana TAIR10
Primary Identifier:  ? AT5G43860 Defline:  (1 of 1) PTHR33428//PTHR33428:SF1 - FAMILY NOT NAMED // CHLOROPHYLLASE-2, CHLOROPLASTIC
Genomic Order:  3739 Name:  ? AT5G43860
Secondary Identifier:  ? PAC:19666781
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5098 Arabidopsis thaliana pathologic  
Athaliana PWY-6927 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G43860 0.5kb upstream 0.5kb upstream 2363 true Chr5: 17629950-17632312 Arabidopsis thaliana
AT5G43860 0.5kb upstream 0.5kb upstream 500 false Chr5: 17629950-17630449 Arabidopsis thaliana
AT5G43860 0.5kb downstream 0.5kb downstream 2363 true Chr5: 17630450-17632812 Arabidopsis thaliana
AT5G43860 0.5kb downstream 0.5kb downstream 500 false Chr5: 17632313-17632812 Arabidopsis thaliana
AT5G43860 1.0kb upstream 1.0kb upstream 2863 true Chr5: 17629450-17632312 Arabidopsis thaliana
AT5G43860 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17629450-17630449 Arabidopsis thaliana
AT5G43860 1.0kb downstream 1.0kb downstream 2863 true Chr5: 17630450-17633312 Arabidopsis thaliana
AT5G43860 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17632313-17633312 Arabidopsis thaliana
AT5G43860 2.0kb upstream 2.0kb upstream 3863 true Chr5: 17628450-17632312 Arabidopsis thaliana
AT5G43860 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17628450-17630449 Arabidopsis thaliana
AT5G43860 2.0kb downstream 2.0kb downstream 3863 true Chr5: 17630450-17634312 Arabidopsis thaliana
AT5G43860 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17632313-17634312 Arabidopsis thaliana
AT5G43860 5.0kb upstream 5.0kb upstream 6863 true Chr5: 17625450-17632312 Arabidopsis thaliana
AT5G43860 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17625450-17630449 Arabidopsis thaliana
AT5G43860 5.0kb downstream 5.0kb downstream 6863 true Chr5: 17630450-17637312 Arabidopsis thaliana
AT5G43860 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17632313-17637312 Arabidopsis thaliana
AT5G43860 10.0kb upstream 10.0kb upstream 11863 true Chr5: 17620450-17632312 Arabidopsis thaliana
AT5G43860 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17620450-17630449 Arabidopsis thaliana
AT5G43860 10.0kb downstream 10.0kb downstream 11863 true Chr5: 17630450-17642312 Arabidopsis thaliana
AT5G43860 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17632313-17642312 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368373 5261 Brassicaceae View MSA
123830139 5264 Brassicales-Malvales View MSA
124340382 5266 SBM View MSA
124250638 5268 Malvidae View MSA
124065690 5270 Rosid View MSA
123737382 5271 Pentapetalae View MSA
122788570 5272 Eudicot View MSA
122043389 5273 Angiosperm View MSA
121344751 5274 Embryophyte View MSA
123428003 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.623        
cufflinks 0.463        
cufflinks 4.043       High
cufflinks 0.693        
cufflinks 4.941       High
cufflinks 0.221     Low Low

0 Strain