Gene : YUC5 A. thaliana TAIR10
Primary Identifier:  ? AT5G43890 Defline:  (1 of 3) PTHR23023:SF83 - INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA5-RELATED
Genomic Order:  3742 Name:  ? AT5G43890
Secondary Identifier:  ? PAC:19667055
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWYDQC-4 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G43890 0.5kb upstream 0.5kb upstream 1775 true Chr5: 17648857-17650631 Arabidopsis thaliana
AT5G43890 0.5kb upstream 0.5kb upstream 500 false Chr5: 17650132-17650631 Arabidopsis thaliana
AT5G43890 0.5kb downstream 0.5kb downstream 1775 true Chr5: 17648357-17650131 Arabidopsis thaliana
AT5G43890 0.5kb downstream 0.5kb downstream 500 false Chr5: 17648357-17648856 Arabidopsis thaliana
AT5G43890 1.0kb upstream 1.0kb upstream 2275 true Chr5: 17648857-17651131 Arabidopsis thaliana
AT5G43890 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17650132-17651131 Arabidopsis thaliana
AT5G43890 1.0kb downstream 1.0kb downstream 2275 true Chr5: 17647857-17650131 Arabidopsis thaliana
AT5G43890 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17647857-17648856 Arabidopsis thaliana
AT5G43890 2.0kb upstream 2.0kb upstream 3275 true Chr5: 17648857-17652131 Arabidopsis thaliana
AT5G43890 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17650132-17652131 Arabidopsis thaliana
AT5G43890 2.0kb downstream 2.0kb downstream 3275 true Chr5: 17646857-17650131 Arabidopsis thaliana
AT5G43890 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17646857-17648856 Arabidopsis thaliana
AT5G43890 5.0kb upstream 5.0kb upstream 6275 true Chr5: 17648857-17655131 Arabidopsis thaliana
AT5G43890 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17650132-17655131 Arabidopsis thaliana
AT5G43890 5.0kb downstream 5.0kb downstream 6275 true Chr5: 17643857-17650131 Arabidopsis thaliana
AT5G43890 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17643857-17648856 Arabidopsis thaliana
AT5G43890 10.0kb upstream 10.0kb upstream 11275 true Chr5: 17648857-17660131 Arabidopsis thaliana
AT5G43890 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17650132-17660131 Arabidopsis thaliana
AT5G43890 10.0kb downstream 10.0kb downstream 11275 true Chr5: 17638857-17650131 Arabidopsis thaliana
AT5G43890 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17638857-17648856 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365671 5261 Brassicaceae View MSA
123799011 5264 Brassicales-Malvales View MSA
124296578 5266 SBM View MSA
124244542 5268 Malvidae View MSA
124062448 5270 Rosid View MSA
123751619 5271 Pentapetalae View MSA
122797534 5272 Eudicot View MSA
122049474 5273 Angiosperm View MSA
121351632 5274 Embryophyte View MSA
123426700 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.099     Low Low
cufflinks 7.951        
cufflinks 0.606        
cufflinks 6.556        
cufflinks 0.268        
cufflinks 11.651       High

0 Strain