Gene : AGO10 A. thaliana TAIR10
Primary Identifier:  ? AT5G43810 Defline:  (1 of 1) PTHR22891//PTHR22891:SF45 - EUKARYOTIC TRANSLATION INITIATION FACTOR 2C // PROTEIN ARGONAUTE 10
Genomic Order:  3733 Name:  ? AT5G43810
Secondary Identifier:  ? PAC:19667530
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0 Pathways

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G43810 0.5kb upstream 0.5kb upstream 6326 true Chr5: 17610472-17616797 Arabidopsis thaliana
AT5G43810 0.5kb upstream 0.5kb upstream 500 false Chr5: 17610472-17610971 Arabidopsis thaliana
AT5G43810 0.5kb downstream 0.5kb downstream 6326 true Chr5: 17610972-17617297 Arabidopsis thaliana
AT5G43810 0.5kb downstream 0.5kb downstream 500 false Chr5: 17616798-17617297 Arabidopsis thaliana
AT5G43810 1.0kb upstream 1.0kb upstream 6826 true Chr5: 17609972-17616797 Arabidopsis thaliana
AT5G43810 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17609972-17610971 Arabidopsis thaliana
AT5G43810 1.0kb downstream 1.0kb downstream 6826 true Chr5: 17610972-17617797 Arabidopsis thaliana
AT5G43810 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17616798-17617797 Arabidopsis thaliana
AT5G43810 2.0kb upstream 2.0kb upstream 7826 true Chr5: 17608972-17616797 Arabidopsis thaliana
AT5G43810 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17608972-17610971 Arabidopsis thaliana
AT5G43810 2.0kb downstream 2.0kb downstream 7826 true Chr5: 17610972-17618797 Arabidopsis thaliana
AT5G43810 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17616798-17618797 Arabidopsis thaliana
AT5G43810 5.0kb upstream 5.0kb upstream 10826 true Chr5: 17605972-17616797 Arabidopsis thaliana
AT5G43810 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17605972-17610971 Arabidopsis thaliana
AT5G43810 5.0kb downstream 5.0kb downstream 10826 true Chr5: 17610972-17621797 Arabidopsis thaliana
AT5G43810 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17616798-17621797 Arabidopsis thaliana
AT5G43810 10.0kb upstream 10.0kb upstream 15826 true Chr5: 17600972-17616797 Arabidopsis thaliana
AT5G43810 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17600972-17610971 Arabidopsis thaliana
AT5G43810 10.0kb downstream 10.0kb downstream 15826 true Chr5: 17610972-17626797 Arabidopsis thaliana
AT5G43810 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17616798-17626797 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374630 5261 Brassicaceae View MSA
123834461 5264 Brassicales-Malvales View MSA
124339060 5266 SBM View MSA
124242954 5268 Malvidae View MSA
124061400 5270 Rosid View MSA
123738566 5271 Pentapetalae View MSA
122790150 5272 Eudicot View MSA
122045279 5273 Angiosperm View MSA
121345149 5274 Embryophyte View MSA
123428465 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.342       Low
cufflinks 4.97        
cufflinks 4.035        
cufflinks 5.807       High
cufflinks 3.59        
cufflinks 3.654        

0 Strain