Gene : AT5G43620 A. thaliana TAIR10
Defline:  (1 of 4) K14400 - pre-mRNA cleavage complex 2 protein Pcf11 (PCF11) Genomic Order:  3712
Name:  ? AT5G43620 Secondary Identifier:  ? PAC:19666633
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G43620 0.5kb upstream 0.5kb upstream 1982 true Chr5: 17522020-17524001 Arabidopsis thaliana
AT5G43620 0.5kb upstream 0.5kb upstream 500 false Chr5: 17522020-17522519 Arabidopsis thaliana
AT5G43620 0.5kb downstream 0.5kb downstream 1982 true Chr5: 17522520-17524501 Arabidopsis thaliana
AT5G43620 0.5kb downstream 0.5kb downstream 500 false Chr5: 17524002-17524501 Arabidopsis thaliana
AT5G43620 1.0kb upstream 1.0kb upstream 2482 true Chr5: 17521520-17524001 Arabidopsis thaliana
AT5G43620 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17521520-17522519 Arabidopsis thaliana
AT5G43620 1.0kb downstream 1.0kb downstream 2482 true Chr5: 17522520-17525001 Arabidopsis thaliana
AT5G43620 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17524002-17525001 Arabidopsis thaliana
AT5G43620 2.0kb upstream 2.0kb upstream 3482 true Chr5: 17520520-17524001 Arabidopsis thaliana
AT5G43620 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17520520-17522519 Arabidopsis thaliana
AT5G43620 2.0kb downstream 2.0kb downstream 3482 true Chr5: 17522520-17526001 Arabidopsis thaliana
AT5G43620 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17524002-17526001 Arabidopsis thaliana
AT5G43620 5.0kb upstream 5.0kb upstream 6482 true Chr5: 17517520-17524001 Arabidopsis thaliana
AT5G43620 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17517520-17522519 Arabidopsis thaliana
AT5G43620 5.0kb downstream 5.0kb downstream 6482 true Chr5: 17522520-17529001 Arabidopsis thaliana
AT5G43620 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17524002-17529001 Arabidopsis thaliana
AT5G43620 10.0kb upstream 10.0kb upstream 11482 true Chr5: 17512520-17524001 Arabidopsis thaliana
AT5G43620 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17512520-17522519 Arabidopsis thaliana
AT5G43620 10.0kb downstream 10.0kb downstream 11482 true Chr5: 17522520-17534001 Arabidopsis thaliana
AT5G43620 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17524002-17534001 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027227 5273 Angiosperm View MSA
122377786 5261 Brassicaceae View MSA
123839951 5264 Brassicales-Malvales View MSA
124322667 5266 SBM View MSA
124169194 5268 Malvidae View MSA
124037233 5270 Rosid View MSA
123747858 5271 Pentapetalae View MSA
122772338 5272 Eudicot View MSA
121296913 5274 Embryophyte View MSA
123426332 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.868        
cufflinks 35.516     High  
cufflinks 2.931        
cufflinks 35.24     High  
cufflinks 0.888       Low
cufflinks 51.671     High High

0 Strain