Gene : AT5G43520 A. thaliana TAIR10
Defline:  (1 of 7) PTHR13871:SF42 - CYSTEINE/HISTIDINE-RICH C1 DOMAIN-CONTAINING PROTEIN-RELATED Genomic Order:  3701
Name:  ? AT5G43520 Secondary Identifier:  ? PAC:19666013
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G43520 0.5kb upstream 0.5kb upstream 1253 true Chr5: 17485439-17486691 Arabidopsis thaliana
AT5G43520 0.5kb upstream 0.5kb upstream 500 false Chr5: 17486192-17486691 Arabidopsis thaliana
AT5G43520 0.5kb downstream 0.5kb downstream 1253 true Chr5: 17484939-17486191 Arabidopsis thaliana
AT5G43520 0.5kb downstream 0.5kb downstream 500 false Chr5: 17484939-17485438 Arabidopsis thaliana
AT5G43520 1.0kb upstream 1.0kb upstream 1753 true Chr5: 17485439-17487191 Arabidopsis thaliana
AT5G43520 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17486192-17487191 Arabidopsis thaliana
AT5G43520 1.0kb downstream 1.0kb downstream 1753 true Chr5: 17484439-17486191 Arabidopsis thaliana
AT5G43520 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17484439-17485438 Arabidopsis thaliana
AT5G43520 2.0kb upstream 2.0kb upstream 2753 true Chr5: 17485439-17488191 Arabidopsis thaliana
AT5G43520 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17486192-17488191 Arabidopsis thaliana
AT5G43520 2.0kb downstream 2.0kb downstream 2753 true Chr5: 17483439-17486191 Arabidopsis thaliana
AT5G43520 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17483439-17485438 Arabidopsis thaliana
AT5G43520 5.0kb upstream 5.0kb upstream 5753 true Chr5: 17485439-17491191 Arabidopsis thaliana
AT5G43520 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17486192-17491191 Arabidopsis thaliana
AT5G43520 5.0kb downstream 5.0kb downstream 5753 true Chr5: 17480439-17486191 Arabidopsis thaliana
AT5G43520 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17480439-17485438 Arabidopsis thaliana
AT5G43520 10.0kb upstream 10.0kb upstream 10753 true Chr5: 17485439-17496191 Arabidopsis thaliana
AT5G43520 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17486192-17496191 Arabidopsis thaliana
AT5G43520 10.0kb downstream 10.0kb downstream 10753 true Chr5: 17475439-17486191 Arabidopsis thaliana
AT5G43520 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17475439-17485438 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378925 5261 Brassicaceae View MSA
123802037 5264 Brassicales-Malvales View MSA
124299262 5266 SBM View MSA
124254398 5268 Malvidae View MSA
124074653 5270 Rosid View MSA
123751823 5271 Pentapetalae View MSA
122797568 5272 Eudicot View MSA
122051127 5273 Angiosperm View MSA
121351229 5274 Embryophyte View MSA
123382066 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.018     Low Low
cufflinks 2.286        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.686        
cufflinks 0.015     Low Low
cufflinks 8.808        

0 Strain