Gene : AT5G43400 A. thaliana TAIR10
Defline:  (1 of 4) PTHR31373//PTHR31373:SF0 - FAMILY NOT NAMED // EMB|CAB86628.1 Genomic Order:  3686
Name:  ? AT5G43400 Secondary Identifier:  ? PAC:19672084
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G43400 0.5kb upstream 0.5kb upstream 2780 true Chr5: 17425944-17428723 Arabidopsis thaliana
AT5G43400 0.5kb upstream 0.5kb upstream 500 false Chr5: 17428224-17428723 Arabidopsis thaliana
AT5G43400 0.5kb downstream 0.5kb downstream 2780 true Chr5: 17425444-17428223 Arabidopsis thaliana
AT5G43400 0.5kb downstream 0.5kb downstream 500 false Chr5: 17425444-17425943 Arabidopsis thaliana
AT5G43400 1.0kb upstream 1.0kb upstream 3280 true Chr5: 17425944-17429223 Arabidopsis thaliana
AT5G43400 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17428224-17429223 Arabidopsis thaliana
AT5G43400 1.0kb downstream 1.0kb downstream 3280 true Chr5: 17424944-17428223 Arabidopsis thaliana
AT5G43400 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17424944-17425943 Arabidopsis thaliana
AT5G43400 2.0kb upstream 2.0kb upstream 4280 true Chr5: 17425944-17430223 Arabidopsis thaliana
AT5G43400 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17428224-17430223 Arabidopsis thaliana
AT5G43400 2.0kb downstream 2.0kb downstream 4280 true Chr5: 17423944-17428223 Arabidopsis thaliana
AT5G43400 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17423944-17425943 Arabidopsis thaliana
AT5G43400 5.0kb upstream 5.0kb upstream 7280 true Chr5: 17425944-17433223 Arabidopsis thaliana
AT5G43400 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17428224-17433223 Arabidopsis thaliana
AT5G43400 5.0kb downstream 5.0kb downstream 7280 true Chr5: 17420944-17428223 Arabidopsis thaliana
AT5G43400 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17420944-17425943 Arabidopsis thaliana
AT5G43400 10.0kb upstream 10.0kb upstream 12280 true Chr5: 17425944-17438223 Arabidopsis thaliana
AT5G43400 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17428224-17438223 Arabidopsis thaliana
AT5G43400 10.0kb downstream 10.0kb downstream 12280 true Chr5: 17415944-17428223 Arabidopsis thaliana
AT5G43400 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17415944-17425943 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041452 5273 Angiosperm View MSA
122363090 5261 Brassicaceae View MSA
123828353 5264 Brassicales-Malvales View MSA
124349372 5266 SBM View MSA
124244202 5268 Malvidae View MSA
124064904 5270 Rosid View MSA
123749450 5271 Pentapetalae View MSA
122797220 5272 Eudicot View MSA
121346363 5274 Embryophyte View MSA
123428550 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.256        
cufflinks 5.892        
cufflinks 1.678       Low
cufflinks 8.092        
cufflinks 1.9       Low
cufflinks 9.354       High

0 Strain