Gene : RPP8 A. thaliana TAIR10
Primary Identifier:  ? AT5G43470 Defline:  (1 of 16) PTHR23155//PTHR23155:SF549 - LEUCINE-RICH REPEAT-CONTAINING PROTEIN // DISEASE RESISTANCE RPP8-LIKE PROTEIN 3-RELATED
Genomic Order:  3694 Name:  ? AT5G43470
Secondary Identifier:  ? PAC:19673183
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G43470 0.5kb upstream 0.5kb upstream 5402 true Chr5: 17462547-17467948 Arabidopsis thaliana
AT5G43470 0.5kb upstream 0.5kb upstream 500 false Chr5: 17467449-17467948 Arabidopsis thaliana
AT5G43470 0.5kb downstream 0.5kb downstream 5402 true Chr5: 17462047-17467448 Arabidopsis thaliana
AT5G43470 0.5kb downstream 0.5kb downstream 500 false Chr5: 17462047-17462546 Arabidopsis thaliana
AT5G43470 1.0kb upstream 1.0kb upstream 5902 true Chr5: 17462547-17468448 Arabidopsis thaliana
AT5G43470 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17467449-17468448 Arabidopsis thaliana
AT5G43470 1.0kb downstream 1.0kb downstream 5902 true Chr5: 17461547-17467448 Arabidopsis thaliana
AT5G43470 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17461547-17462546 Arabidopsis thaliana
AT5G43470 2.0kb upstream 2.0kb upstream 6902 true Chr5: 17462547-17469448 Arabidopsis thaliana
AT5G43470 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17467449-17469448 Arabidopsis thaliana
AT5G43470 2.0kb downstream 2.0kb downstream 6902 true Chr5: 17460547-17467448 Arabidopsis thaliana
AT5G43470 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17460547-17462546 Arabidopsis thaliana
AT5G43470 5.0kb upstream 5.0kb upstream 9902 true Chr5: 17462547-17472448 Arabidopsis thaliana
AT5G43470 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17467449-17472448 Arabidopsis thaliana
AT5G43470 5.0kb downstream 5.0kb downstream 9902 true Chr5: 17457547-17467448 Arabidopsis thaliana
AT5G43470 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17457547-17462546 Arabidopsis thaliana
AT5G43470 10.0kb upstream 10.0kb upstream 14902 true Chr5: 17462547-17477448 Arabidopsis thaliana
AT5G43470 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17467449-17477448 Arabidopsis thaliana
AT5G43470 10.0kb downstream 10.0kb downstream 14902 true Chr5: 17452547-17467448 Arabidopsis thaliana
AT5G43470 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17452547-17462546 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122338841 5261 Brassicaceae View MSA
123841861 5264 Brassicales-Malvales View MSA
124323080 5266 SBM View MSA
124253634 5268 Malvidae View MSA
124074947 5270 Rosid View MSA
123753572 5271 Pentapetalae View MSA
122797897 5272 Eudicot View MSA
122051706 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.978        
cufflinks 0.16     Low  
cufflinks 18.73        
cufflinks 0.31     Low  
cufflinks 19.517        
cufflinks 0.095     Low Low

0 Strain