Gene : AT5G43460 A. thaliana TAIR10
Defline:  (1 of 6) PF05514 - HR-like lesion-inducing (HR_lesion) Genomic Order:  3693
Name:  ? AT5G43460 Secondary Identifier:  ? PAC:19672558
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G43460 0.5kb upstream 0.5kb upstream 2379 true Chr5: 17459373-17461751 Arabidopsis thaliana
AT5G43460 0.5kb upstream 0.5kb upstream 500 false Chr5: 17459373-17459872 Arabidopsis thaliana
AT5G43460 0.5kb downstream 0.5kb downstream 2379 true Chr5: 17459873-17462251 Arabidopsis thaliana
AT5G43460 0.5kb downstream 0.5kb downstream 500 false Chr5: 17461752-17462251 Arabidopsis thaliana
AT5G43460 1.0kb upstream 1.0kb upstream 2879 true Chr5: 17458873-17461751 Arabidopsis thaliana
AT5G43460 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17458873-17459872 Arabidopsis thaliana
AT5G43460 1.0kb downstream 1.0kb downstream 2879 true Chr5: 17459873-17462751 Arabidopsis thaliana
AT5G43460 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17461752-17462751 Arabidopsis thaliana
AT5G43460 2.0kb upstream 2.0kb upstream 3879 true Chr5: 17457873-17461751 Arabidopsis thaliana
AT5G43460 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17457873-17459872 Arabidopsis thaliana
AT5G43460 2.0kb downstream 2.0kb downstream 3879 true Chr5: 17459873-17463751 Arabidopsis thaliana
AT5G43460 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17461752-17463751 Arabidopsis thaliana
AT5G43460 5.0kb upstream 5.0kb upstream 6879 true Chr5: 17454873-17461751 Arabidopsis thaliana
AT5G43460 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17454873-17459872 Arabidopsis thaliana
AT5G43460 5.0kb downstream 5.0kb downstream 6879 true Chr5: 17459873-17466751 Arabidopsis thaliana
AT5G43460 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17461752-17466751 Arabidopsis thaliana
AT5G43460 10.0kb upstream 10.0kb upstream 11879 true Chr5: 17449873-17461751 Arabidopsis thaliana
AT5G43460 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17449873-17459872 Arabidopsis thaliana
AT5G43460 10.0kb downstream 10.0kb downstream 11879 true Chr5: 17459873-17471751 Arabidopsis thaliana
AT5G43460 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17461752-17471751 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364934 5261 Brassicaceae View MSA
123836612 5264 Brassicales-Malvales View MSA
124343652 5266 SBM View MSA
124236999 5268 Malvidae View MSA
124068241 5270 Rosid View MSA
123750516 5271 Pentapetalae View MSA
122797406 5272 Eudicot View MSA
122050658 5273 Angiosperm View MSA
121351347 5274 Embryophyte View MSA
123426506 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.616     High Low
cufflinks 107.767     High High
cufflinks 37.589     High  
cufflinks 84.862     High  
cufflinks 37.582     High  
cufflinks 95.811     High  

0 Strain