Gene : AT5G43310 A. thaliana TAIR10
Defline:  (1 of 1) PTHR31008:SF0 - COP1-INTERACTING PROTEIN-LIKE PROTEIN Genomic Order:  3677
Name:  ? AT5G43310 Secondary Identifier:  ? PAC:19667010
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G43310 0.5kb upstream 0.5kb upstream 6550 true Chr5: 17379486-17386035 Arabidopsis thaliana
AT5G43310 0.5kb upstream 0.5kb upstream 500 false Chr5: 17385536-17386035 Arabidopsis thaliana
AT5G43310 0.5kb downstream 0.5kb downstream 6550 true Chr5: 17378986-17385535 Arabidopsis thaliana
AT5G43310 0.5kb downstream 0.5kb downstream 500 false Chr5: 17378986-17379485 Arabidopsis thaliana
AT5G43310 1.0kb upstream 1.0kb upstream 7050 true Chr5: 17379486-17386535 Arabidopsis thaliana
AT5G43310 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17385536-17386535 Arabidopsis thaliana
AT5G43310 1.0kb downstream 1.0kb downstream 7050 true Chr5: 17378486-17385535 Arabidopsis thaliana
AT5G43310 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17378486-17379485 Arabidopsis thaliana
AT5G43310 2.0kb upstream 2.0kb upstream 8050 true Chr5: 17379486-17387535 Arabidopsis thaliana
AT5G43310 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17385536-17387535 Arabidopsis thaliana
AT5G43310 2.0kb downstream 2.0kb downstream 8050 true Chr5: 17377486-17385535 Arabidopsis thaliana
AT5G43310 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17377486-17379485 Arabidopsis thaliana
AT5G43310 5.0kb upstream 5.0kb upstream 11050 true Chr5: 17379486-17390535 Arabidopsis thaliana
AT5G43310 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17385536-17390535 Arabidopsis thaliana
AT5G43310 5.0kb downstream 5.0kb downstream 11050 true Chr5: 17374486-17385535 Arabidopsis thaliana
AT5G43310 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17374486-17379485 Arabidopsis thaliana
AT5G43310 10.0kb upstream 10.0kb upstream 16050 true Chr5: 17379486-17395535 Arabidopsis thaliana
AT5G43310 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17385536-17395535 Arabidopsis thaliana
AT5G43310 10.0kb downstream 10.0kb downstream 16050 true Chr5: 17369486-17385535 Arabidopsis thaliana
AT5G43310 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17369486-17379485 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367029 5261 Brassicaceae View MSA
123840807 5264 Brassicales-Malvales View MSA
124345172 5266 SBM View MSA
124253740 5268 Malvidae View MSA
124060773 5270 Rosid View MSA
123744546 5271 Pentapetalae View MSA
122797843 5272 Eudicot View MSA
122048758 5273 Angiosperm View MSA
121350762 5274 Embryophyte View MSA
123381879 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.604        
cufflinks 4.457        
cufflinks 1.968       Low
cufflinks 4.071        
cufflinks 1.807       Low
cufflinks 5.714       High

0 Strain