Gene : AT5G43175 A. thaliana TAIR10
Defline:  (1 of 4) PTHR16223//PTHR16223:SF9 - FAMILY NOT NAMED // TRANSCRIPTION FACTOR BHLH139-RELATED Genomic Order:  3660
Name:  ? AT5G43175 Secondary Identifier:  ? PAC:19670904
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G43175 0.5kb upstream 0.5kb upstream 1614 true Chr5: 17333621-17335234 Arabidopsis thaliana
AT5G43175 0.5kb upstream 0.5kb upstream 500 false Chr5: 17333621-17334120 Arabidopsis thaliana
AT5G43175 0.5kb downstream 0.5kb downstream 1614 true Chr5: 17334121-17335734 Arabidopsis thaliana
AT5G43175 0.5kb downstream 0.5kb downstream 500 false Chr5: 17335235-17335734 Arabidopsis thaliana
AT5G43175 1.0kb upstream 1.0kb upstream 2114 true Chr5: 17333121-17335234 Arabidopsis thaliana
AT5G43175 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17333121-17334120 Arabidopsis thaliana
AT5G43175 1.0kb downstream 1.0kb downstream 2114 true Chr5: 17334121-17336234 Arabidopsis thaliana
AT5G43175 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17335235-17336234 Arabidopsis thaliana
AT5G43175 2.0kb upstream 2.0kb upstream 3114 true Chr5: 17332121-17335234 Arabidopsis thaliana
AT5G43175 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17332121-17334120 Arabidopsis thaliana
AT5G43175 2.0kb downstream 2.0kb downstream 3114 true Chr5: 17334121-17337234 Arabidopsis thaliana
AT5G43175 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17335235-17337234 Arabidopsis thaliana
AT5G43175 5.0kb upstream 5.0kb upstream 6114 true Chr5: 17329121-17335234 Arabidopsis thaliana
AT5G43175 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17329121-17334120 Arabidopsis thaliana
AT5G43175 5.0kb downstream 5.0kb downstream 6114 true Chr5: 17334121-17340234 Arabidopsis thaliana
AT5G43175 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17335235-17340234 Arabidopsis thaliana
AT5G43175 10.0kb upstream 10.0kb upstream 11114 true Chr5: 17324121-17335234 Arabidopsis thaliana
AT5G43175 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17324121-17334120 Arabidopsis thaliana
AT5G43175 10.0kb downstream 10.0kb downstream 11114 true Chr5: 17334121-17345234 Arabidopsis thaliana
AT5G43175 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17335235-17345234 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377094 5261 Brassicaceae View MSA
123801441 5264 Brassicales-Malvales View MSA
124298742 5266 SBM View MSA
124150315 5268 Malvidae View MSA
124050776 5270 Rosid View MSA
123748032 5271 Pentapetalae View MSA
122792151 5272 Eudicot View MSA
122043833 5273 Angiosperm View MSA
121310197 5274 Embryophyte View MSA
123347755 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.062     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.098     Low  

0 Strain