Gene : SPL2 A. thaliana TAIR10
Primary Identifier:  ? AT5G43270 Defline:  (1 of 3) PTHR31251:SF1 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 10-RELATED
Genomic Order:  3672 Name:  ? AT5G43270
Secondary Identifier:  ? PAC:19665479
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G43270 0.5kb upstream 0.5kb upstream 3987 true Chr5: 17360287-17364273 Arabidopsis thaliana
AT5G43270 0.5kb upstream 0.5kb upstream 500 false Chr5: 17363774-17364273 Arabidopsis thaliana
AT5G43270 0.5kb downstream 0.5kb downstream 3987 true Chr5: 17359787-17363773 Arabidopsis thaliana
AT5G43270 0.5kb downstream 0.5kb downstream 500 false Chr5: 17359787-17360286 Arabidopsis thaliana
AT5G43270 1.0kb upstream 1.0kb upstream 4487 true Chr5: 17360287-17364773 Arabidopsis thaliana
AT5G43270 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17363774-17364773 Arabidopsis thaliana
AT5G43270 1.0kb downstream 1.0kb downstream 4487 true Chr5: 17359287-17363773 Arabidopsis thaliana
AT5G43270 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17359287-17360286 Arabidopsis thaliana
AT5G43270 2.0kb upstream 2.0kb upstream 5487 true Chr5: 17360287-17365773 Arabidopsis thaliana
AT5G43270 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17363774-17365773 Arabidopsis thaliana
AT5G43270 2.0kb downstream 2.0kb downstream 5487 true Chr5: 17358287-17363773 Arabidopsis thaliana
AT5G43270 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17358287-17360286 Arabidopsis thaliana
AT5G43270 5.0kb upstream 5.0kb upstream 8487 true Chr5: 17360287-17368773 Arabidopsis thaliana
AT5G43270 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17363774-17368773 Arabidopsis thaliana
AT5G43270 5.0kb downstream 5.0kb downstream 8487 true Chr5: 17355287-17363773 Arabidopsis thaliana
AT5G43270 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17355287-17360286 Arabidopsis thaliana
AT5G43270 10.0kb upstream 10.0kb upstream 13487 true Chr5: 17360287-17373773 Arabidopsis thaliana
AT5G43270 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17363774-17373773 Arabidopsis thaliana
AT5G43270 10.0kb downstream 10.0kb downstream 13487 true Chr5: 17350287-17363773 Arabidopsis thaliana
AT5G43270 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17350287-17360286 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027881 5273 Angiosperm View MSA
122365009 5261 Brassicaceae View MSA
123832556 5264 Brassicales-Malvales View MSA
124344583 5266 SBM View MSA
124253262 5268 Malvidae View MSA
124072041 5270 Rosid View MSA
123745065 5271 Pentapetalae View MSA
122789377 5272 Eudicot View MSA
123428908 5275 Viridiplantae View MSA
121351727 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.85       High
cufflinks 2.148       Low
cufflinks 3.429        
cufflinks 2.82        
cufflinks 3.385        
cufflinks 2.849        

0 Strain