Gene : CYCA3;1 A. thaliana TAIR10
Primary Identifier:  ? AT5G43080 Defline:  (1 of 4) PTHR10177//PTHR10177:SF100 - CYCLINE // CYCLIN-A3-2-RELATED
Genomic Order:  3650 Name:  ? AT5G43080
Secondary Identifier:  ? PAC:19672053
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G43080 0.5kb upstream 0.5kb upstream 2063 true Chr5: 17292727-17294789 Arabidopsis thaliana
AT5G43080 0.5kb upstream 0.5kb upstream 500 false Chr5: 17292727-17293226 Arabidopsis thaliana
AT5G43080 0.5kb downstream 0.5kb downstream 2063 true Chr5: 17293227-17295289 Arabidopsis thaliana
AT5G43080 0.5kb downstream 0.5kb downstream 500 false Chr5: 17294790-17295289 Arabidopsis thaliana
AT5G43080 1.0kb upstream 1.0kb upstream 2563 true Chr5: 17292227-17294789 Arabidopsis thaliana
AT5G43080 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17292227-17293226 Arabidopsis thaliana
AT5G43080 1.0kb downstream 1.0kb downstream 2563 true Chr5: 17293227-17295789 Arabidopsis thaliana
AT5G43080 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17294790-17295789 Arabidopsis thaliana
AT5G43080 2.0kb upstream 2.0kb upstream 3563 true Chr5: 17291227-17294789 Arabidopsis thaliana
AT5G43080 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17291227-17293226 Arabidopsis thaliana
AT5G43080 2.0kb downstream 2.0kb downstream 3563 true Chr5: 17293227-17296789 Arabidopsis thaliana
AT5G43080 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17294790-17296789 Arabidopsis thaliana
AT5G43080 5.0kb upstream 5.0kb upstream 6563 true Chr5: 17288227-17294789 Arabidopsis thaliana
AT5G43080 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17288227-17293226 Arabidopsis thaliana
AT5G43080 5.0kb downstream 5.0kb downstream 6563 true Chr5: 17293227-17299789 Arabidopsis thaliana
AT5G43080 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17294790-17299789 Arabidopsis thaliana
AT5G43080 10.0kb upstream 10.0kb upstream 11563 true Chr5: 17283227-17294789 Arabidopsis thaliana
AT5G43080 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17283227-17293226 Arabidopsis thaliana
AT5G43080 10.0kb downstream 10.0kb downstream 11563 true Chr5: 17293227-17304789 Arabidopsis thaliana
AT5G43080 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17294790-17304789 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368730 5261 Brassicaceae View MSA
123839229 5264 Brassicales-Malvales View MSA
124344740 5266 SBM View MSA
124242923 5268 Malvidae View MSA
124066944 5270 Rosid View MSA
123741771 5271 Pentapetalae View MSA
122792448 5272 Eudicot View MSA
122043668 5273 Angiosperm View MSA
123429011 5275 Viridiplantae View MSA
121349586 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.995        
cufflinks 3.555        
cufflinks 2.788        
cufflinks 3.4        
cufflinks 1.972       Low
cufflinks 3.933       High

0 Strain