Gene : AT5G43100 A. thaliana TAIR10
Defline:  (1 of 2) PTHR13683//PTHR13683:SF342 - ASPARTYL PROTEASES // SUBFAMILY NOT NAMED Genomic Order:  3652
Name:  ? AT5G43100 Secondary Identifier:  ? PAC:19672424
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G43100 0.5kb upstream 0.5kb upstream 4436 true Chr5: 17298623-17303058 Arabidopsis thaliana
AT5G43100 0.5kb upstream 0.5kb upstream 500 false Chr5: 17298623-17299122 Arabidopsis thaliana
AT5G43100 0.5kb downstream 0.5kb downstream 4436 true Chr5: 17299123-17303558 Arabidopsis thaliana
AT5G43100 0.5kb downstream 0.5kb downstream 500 false Chr5: 17303059-17303558 Arabidopsis thaliana
AT5G43100 1.0kb upstream 1.0kb upstream 4936 true Chr5: 17298123-17303058 Arabidopsis thaliana
AT5G43100 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17298123-17299122 Arabidopsis thaliana
AT5G43100 1.0kb downstream 1.0kb downstream 4936 true Chr5: 17299123-17304058 Arabidopsis thaliana
AT5G43100 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17303059-17304058 Arabidopsis thaliana
AT5G43100 2.0kb upstream 2.0kb upstream 5936 true Chr5: 17297123-17303058 Arabidopsis thaliana
AT5G43100 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17297123-17299122 Arabidopsis thaliana
AT5G43100 2.0kb downstream 2.0kb downstream 5936 true Chr5: 17299123-17305058 Arabidopsis thaliana
AT5G43100 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17303059-17305058 Arabidopsis thaliana
AT5G43100 5.0kb upstream 5.0kb upstream 8936 true Chr5: 17294123-17303058 Arabidopsis thaliana
AT5G43100 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17294123-17299122 Arabidopsis thaliana
AT5G43100 5.0kb downstream 5.0kb downstream 8936 true Chr5: 17299123-17308058 Arabidopsis thaliana
AT5G43100 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17303059-17308058 Arabidopsis thaliana
AT5G43100 10.0kb upstream 10.0kb upstream 13936 true Chr5: 17289123-17303058 Arabidopsis thaliana
AT5G43100 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17289123-17299122 Arabidopsis thaliana
AT5G43100 10.0kb downstream 10.0kb downstream 13936 true Chr5: 17299123-17313058 Arabidopsis thaliana
AT5G43100 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17303059-17313058 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374648 5261 Brassicaceae View MSA
123829441 5264 Brassicales-Malvales View MSA
124344304 5266 SBM View MSA
124241662 5268 Malvidae View MSA
124072520 5270 Rosid View MSA
123741714 5271 Pentapetalae View MSA
122786782 5272 Eudicot View MSA
122041856 5273 Angiosperm View MSA
121346441 5274 Embryophyte View MSA
123428674 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.753        
cufflinks 17.39        
cufflinks 10.629       Low
cufflinks 20.203       High
cufflinks 13.11        
cufflinks 16.237        

0 Strain