Gene : THO5 A. thaliana TAIR10
Primary Identifier:  ? AT5G42920 Defline:  (1 of 2) K13174 - THO complex subunit 5 (THOC5)
Genomic Order:  3630 Name:  ? AT5G42920
Secondary Identifier:  ? PAC:19665962
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G42920 0.5kb upstream 0.5kb upstream 3895 true Chr5: 17206151-17210045 Arabidopsis thaliana
AT5G42920 0.5kb upstream 0.5kb upstream 500 false Chr5: 17209546-17210045 Arabidopsis thaliana
AT5G42920 0.5kb downstream 0.5kb downstream 3895 true Chr5: 17205651-17209545 Arabidopsis thaliana
AT5G42920 0.5kb downstream 0.5kb downstream 500 false Chr5: 17205651-17206150 Arabidopsis thaliana
AT5G42920 1.0kb upstream 1.0kb upstream 4395 true Chr5: 17206151-17210545 Arabidopsis thaliana
AT5G42920 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17209546-17210545 Arabidopsis thaliana
AT5G42920 1.0kb downstream 1.0kb downstream 4395 true Chr5: 17205151-17209545 Arabidopsis thaliana
AT5G42920 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17205151-17206150 Arabidopsis thaliana
AT5G42920 2.0kb upstream 2.0kb upstream 5395 true Chr5: 17206151-17211545 Arabidopsis thaliana
AT5G42920 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17209546-17211545 Arabidopsis thaliana
AT5G42920 2.0kb downstream 2.0kb downstream 5395 true Chr5: 17204151-17209545 Arabidopsis thaliana
AT5G42920 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17204151-17206150 Arabidopsis thaliana
AT5G42920 5.0kb upstream 5.0kb upstream 8395 true Chr5: 17206151-17214545 Arabidopsis thaliana
AT5G42920 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17209546-17214545 Arabidopsis thaliana
AT5G42920 5.0kb downstream 5.0kb downstream 8395 true Chr5: 17201151-17209545 Arabidopsis thaliana
AT5G42920 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17201151-17206150 Arabidopsis thaliana
AT5G42920 10.0kb upstream 10.0kb upstream 13395 true Chr5: 17206151-17219545 Arabidopsis thaliana
AT5G42920 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17209546-17219545 Arabidopsis thaliana
AT5G42920 10.0kb downstream 10.0kb downstream 13395 true Chr5: 17196151-17209545 Arabidopsis thaliana
AT5G42920 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17196151-17206150 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365746 5261 Brassicaceae View MSA
123832663 5264 Brassicales-Malvales View MSA
124337974 5266 SBM View MSA
124241066 5268 Malvidae View MSA
124064206 5270 Rosid View MSA
123737010 5271 Pentapetalae View MSA
122786339 5272 Eudicot View MSA
122045756 5273 Angiosperm View MSA
121346778 5274 Embryophyte View MSA
123425483 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.521       Low
cufflinks 7.892        
cufflinks 6.046        
cufflinks 7.852        
cufflinks 6.031        
cufflinks 7.695        

0 Strain