Gene : AT5G42830 A. thaliana TAIR10
Defline:  (1 of 13) 2.3.1.133 - Shikimate O-hydroxycinnamoyltransferase Genomic Order:  3619
Name:  ? AT5G42830 Secondary Identifier:  ? PAC:19668740
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-361 Arabidopsis thaliana pathologic  
Athaliana PWY-6039 Arabidopsis thaliana pathologic  
Athaliana PWY-6040 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G42830 0.5kb upstream 0.5kb upstream 2135 true Chr5: 17175884-17178018 Arabidopsis thaliana
AT5G42830 0.5kb upstream 0.5kb upstream 500 false Chr5: 17175884-17176383 Arabidopsis thaliana
AT5G42830 0.5kb downstream 0.5kb downstream 2135 true Chr5: 17176384-17178518 Arabidopsis thaliana
AT5G42830 0.5kb downstream 0.5kb downstream 500 false Chr5: 17178019-17178518 Arabidopsis thaliana
AT5G42830 1.0kb upstream 1.0kb upstream 2635 true Chr5: 17175384-17178018 Arabidopsis thaliana
AT5G42830 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17175384-17176383 Arabidopsis thaliana
AT5G42830 1.0kb downstream 1.0kb downstream 2635 true Chr5: 17176384-17179018 Arabidopsis thaliana
AT5G42830 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17178019-17179018 Arabidopsis thaliana
AT5G42830 2.0kb upstream 2.0kb upstream 3635 true Chr5: 17174384-17178018 Arabidopsis thaliana
AT5G42830 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17174384-17176383 Arabidopsis thaliana
AT5G42830 2.0kb downstream 2.0kb downstream 3635 true Chr5: 17176384-17180018 Arabidopsis thaliana
AT5G42830 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17178019-17180018 Arabidopsis thaliana
AT5G42830 5.0kb upstream 5.0kb upstream 6635 true Chr5: 17171384-17178018 Arabidopsis thaliana
AT5G42830 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17171384-17176383 Arabidopsis thaliana
AT5G42830 5.0kb downstream 5.0kb downstream 6635 true Chr5: 17176384-17183018 Arabidopsis thaliana
AT5G42830 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17178019-17183018 Arabidopsis thaliana
AT5G42830 10.0kb upstream 10.0kb upstream 11635 true Chr5: 17166384-17178018 Arabidopsis thaliana
AT5G42830 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17166384-17176383 Arabidopsis thaliana
AT5G42830 10.0kb downstream 10.0kb downstream 11635 true Chr5: 17176384-17188018 Arabidopsis thaliana
AT5G42830 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17178019-17188018 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364120 5261 Brassicaceae View MSA
123837047 5264 Brassicales-Malvales View MSA
124344144 5266 SBM View MSA
124238828 5268 Malvidae View MSA
124068484 5270 Rosid View MSA
123747860 5271 Pentapetalae View MSA
122791254 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.284       High
cufflinks 3.505       Low
cufflinks 4.764        
cufflinks 8.782        
cufflinks 11.693        
cufflinks 6.804        

0 Strain