Gene : AT5G42850 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12452 - 42-9-9 PROTEIN-RELATED Genomic Order:  3621
Name:  ? AT5G42850 Secondary Identifier:  ? PAC:19670931
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G42850 0.5kb upstream 0.5kb upstream 1417 true Chr5: 17181707-17183123 Arabidopsis thaliana
AT5G42850 0.5kb upstream 0.5kb upstream 500 false Chr5: 17182624-17183123 Arabidopsis thaliana
AT5G42850 0.5kb downstream 0.5kb downstream 1417 true Chr5: 17181207-17182623 Arabidopsis thaliana
AT5G42850 0.5kb downstream 0.5kb downstream 500 false Chr5: 17181207-17181706 Arabidopsis thaliana
AT5G42850 1.0kb upstream 1.0kb upstream 1917 true Chr5: 17181707-17183623 Arabidopsis thaliana
AT5G42850 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17182624-17183623 Arabidopsis thaliana
AT5G42850 1.0kb downstream 1.0kb downstream 1917 true Chr5: 17180707-17182623 Arabidopsis thaliana
AT5G42850 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17180707-17181706 Arabidopsis thaliana
AT5G42850 2.0kb upstream 2.0kb upstream 2917 true Chr5: 17181707-17184623 Arabidopsis thaliana
AT5G42850 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17182624-17184623 Arabidopsis thaliana
AT5G42850 2.0kb downstream 2.0kb downstream 2917 true Chr5: 17179707-17182623 Arabidopsis thaliana
AT5G42850 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17179707-17181706 Arabidopsis thaliana
AT5G42850 5.0kb upstream 5.0kb upstream 5917 true Chr5: 17181707-17187623 Arabidopsis thaliana
AT5G42850 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17182624-17187623 Arabidopsis thaliana
AT5G42850 5.0kb downstream 5.0kb downstream 5917 true Chr5: 17176707-17182623 Arabidopsis thaliana
AT5G42850 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17176707-17181706 Arabidopsis thaliana
AT5G42850 10.0kb upstream 10.0kb upstream 10917 true Chr5: 17181707-17192623 Arabidopsis thaliana
AT5G42850 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17182624-17192623 Arabidopsis thaliana
AT5G42850 10.0kb downstream 10.0kb downstream 10917 true Chr5: 17171707-17182623 Arabidopsis thaliana
AT5G42850 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17171707-17181706 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366882 5261 Brassicaceae View MSA
123832177 5264 Brassicales-Malvales View MSA
124340916 5266 SBM View MSA
124238149 5268 Malvidae View MSA
124062301 5270 Rosid View MSA
123739980 5271 Pentapetalae View MSA
122791634 5272 Eudicot View MSA
122046977 5273 Angiosperm View MSA
121346988 5274 Embryophyte View MSA
123427976 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.08     High  
cufflinks 44.441     High High
cufflinks 27.463     High Low
cufflinks 40.826     High  
cufflinks 33.78     High  
cufflinks 38.903     High  

0 Strain