Gene : PAF1 A. thaliana TAIR10
Primary Identifier:  ? AT5G42790 Defline:  (1 of 2) K02725 - 20S proteasome subunit alpha 6 (PSMA1)
Genomic Order:  3613 Name:  ? AT5G42790
Secondary Identifier:  ? PAC:19670251
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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G42790 0.5kb upstream 0.5kb upstream 2527 true Chr5: 17159044-17161570 Arabidopsis thaliana
AT5G42790 0.5kb upstream 0.5kb upstream 500 false Chr5: 17161071-17161570 Arabidopsis thaliana
AT5G42790 0.5kb downstream 0.5kb downstream 2527 true Chr5: 17158544-17161070 Arabidopsis thaliana
AT5G42790 0.5kb downstream 0.5kb downstream 500 false Chr5: 17158544-17159043 Arabidopsis thaliana
AT5G42790 1.0kb upstream 1.0kb upstream 3027 true Chr5: 17159044-17162070 Arabidopsis thaliana
AT5G42790 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17161071-17162070 Arabidopsis thaliana
AT5G42790 1.0kb downstream 1.0kb downstream 3027 true Chr5: 17158044-17161070 Arabidopsis thaliana
AT5G42790 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17158044-17159043 Arabidopsis thaliana
AT5G42790 2.0kb upstream 2.0kb upstream 4027 true Chr5: 17159044-17163070 Arabidopsis thaliana
AT5G42790 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17161071-17163070 Arabidopsis thaliana
AT5G42790 2.0kb downstream 2.0kb downstream 4027 true Chr5: 17157044-17161070 Arabidopsis thaliana
AT5G42790 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17157044-17159043 Arabidopsis thaliana
AT5G42790 5.0kb upstream 5.0kb upstream 7027 true Chr5: 17159044-17166070 Arabidopsis thaliana
AT5G42790 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17161071-17166070 Arabidopsis thaliana
AT5G42790 5.0kb downstream 5.0kb downstream 7027 true Chr5: 17154044-17161070 Arabidopsis thaliana
AT5G42790 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17154044-17159043 Arabidopsis thaliana
AT5G42790 10.0kb upstream 10.0kb upstream 12027 true Chr5: 17159044-17171070 Arabidopsis thaliana
AT5G42790 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17161071-17171070 Arabidopsis thaliana
AT5G42790 10.0kb downstream 10.0kb downstream 12027 true Chr5: 17149044-17161070 Arabidopsis thaliana
AT5G42790 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17149044-17159043 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371156 5261 Brassicaceae View MSA
123838687 5264 Brassicales-Malvales View MSA
124340801 5266 SBM View MSA
124251312 5268 Malvidae View MSA
124065992 5270 Rosid View MSA
123739295 5271 Pentapetalae View MSA
122791097 5272 Eudicot View MSA
122046892 5273 Angiosperm View MSA
121347001 5274 Embryophyte View MSA
123424863 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 47.451     High  
cufflinks 44.503     High  
cufflinks 39.289     High Low
cufflinks 47.503     High  
cufflinks 40.403     High Low
cufflinks 50.33     High High

0 Strain