Gene : LCR28 A. thaliana TAIR10
Primary Identifier:  ? AT5G42797 Defline:  (1 of 13) PTHR33830//PTHR33830:SF3 - FAMILY NOT NAMED // DEFENSIN-LIKE PROTEIN 122-RELATED
Genomic Order:  3614 Name:  ? AT5G42797
Secondary Identifier:  ? PAC:19666259
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G42797 0.5kb upstream 0.5kb upstream 879 true Chr5: 17162696-17163574 Arabidopsis thaliana
AT5G42797 0.5kb upstream 0.5kb upstream 500 false Chr5: 17162696-17163195 Arabidopsis thaliana
AT5G42797 0.5kb downstream 0.5kb downstream 879 true Chr5: 17163196-17164074 Arabidopsis thaliana
AT5G42797 0.5kb downstream 0.5kb downstream 500 false Chr5: 17163575-17164074 Arabidopsis thaliana
AT5G42797 1.0kb upstream 1.0kb upstream 1379 true Chr5: 17162196-17163574 Arabidopsis thaliana
AT5G42797 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17162196-17163195 Arabidopsis thaliana
AT5G42797 1.0kb downstream 1.0kb downstream 1379 true Chr5: 17163196-17164574 Arabidopsis thaliana
AT5G42797 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17163575-17164574 Arabidopsis thaliana
AT5G42797 2.0kb upstream 2.0kb upstream 2379 true Chr5: 17161196-17163574 Arabidopsis thaliana
AT5G42797 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17161196-17163195 Arabidopsis thaliana
AT5G42797 2.0kb downstream 2.0kb downstream 2379 true Chr5: 17163196-17165574 Arabidopsis thaliana
AT5G42797 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17163575-17165574 Arabidopsis thaliana
AT5G42797 5.0kb upstream 5.0kb upstream 5379 true Chr5: 17158196-17163574 Arabidopsis thaliana
AT5G42797 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17158196-17163195 Arabidopsis thaliana
AT5G42797 5.0kb downstream 5.0kb downstream 5379 true Chr5: 17163196-17168574 Arabidopsis thaliana
AT5G42797 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17163575-17168574 Arabidopsis thaliana
AT5G42797 10.0kb upstream 10.0kb upstream 10379 true Chr5: 17153196-17163574 Arabidopsis thaliana
AT5G42797 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17153196-17163195 Arabidopsis thaliana
AT5G42797 10.0kb downstream 10.0kb downstream 10379 true Chr5: 17163196-17173574 Arabidopsis thaliana
AT5G42797 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17163575-17173574 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121495059 5273 Angiosperm Singleton cluster - no MSA
122330946 5261 Brassicaceae Singleton cluster - no MSA
123772162 5264 Brassicales-Malvales Singleton cluster - no MSA
124270683 5266 SBM Singleton cluster - no MSA
124126742 5268 Malvidae Singleton cluster - no MSA
123855634 5270 Rosid Singleton cluster - no MSA
123441603 5271 Pentapetalae Singleton cluster - no MSA
122477187 5272 Eudicot Singleton cluster - no MSA
120768426 5274 Embryophyte Singleton cluster - no MSA
122810812 5275 Viridiplantae Singleton cluster - no MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain