Gene : AT5G42670 A. thaliana TAIR10
Defline:  (1 of 20) PF05641 - Agenet domain (Agenet) Genomic Order:  3600
Name:  ? AT5G42670 Secondary Identifier:  ? PAC:19666289
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G42670 0.5kb upstream 0.5kb upstream 3000 true Chr5: 17107762-17110761 Arabidopsis thaliana
AT5G42670 0.5kb upstream 0.5kb upstream 500 false Chr5: 17107762-17108261 Arabidopsis thaliana
AT5G42670 0.5kb downstream 0.5kb downstream 3000 true Chr5: 17108262-17111261 Arabidopsis thaliana
AT5G42670 0.5kb downstream 0.5kb downstream 500 false Chr5: 17110762-17111261 Arabidopsis thaliana
AT5G42670 1.0kb upstream 1.0kb upstream 3500 true Chr5: 17107262-17110761 Arabidopsis thaliana
AT5G42670 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17107262-17108261 Arabidopsis thaliana
AT5G42670 1.0kb downstream 1.0kb downstream 3500 true Chr5: 17108262-17111761 Arabidopsis thaliana
AT5G42670 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17110762-17111761 Arabidopsis thaliana
AT5G42670 2.0kb upstream 2.0kb upstream 4500 true Chr5: 17106262-17110761 Arabidopsis thaliana
AT5G42670 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17106262-17108261 Arabidopsis thaliana
AT5G42670 2.0kb downstream 2.0kb downstream 4500 true Chr5: 17108262-17112761 Arabidopsis thaliana
AT5G42670 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17110762-17112761 Arabidopsis thaliana
AT5G42670 5.0kb upstream 5.0kb upstream 7500 true Chr5: 17103262-17110761 Arabidopsis thaliana
AT5G42670 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17103262-17108261 Arabidopsis thaliana
AT5G42670 5.0kb downstream 5.0kb downstream 7500 true Chr5: 17108262-17115761 Arabidopsis thaliana
AT5G42670 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17110762-17115761 Arabidopsis thaliana
AT5G42670 10.0kb upstream 10.0kb upstream 12500 true Chr5: 17098262-17110761 Arabidopsis thaliana
AT5G42670 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17098262-17108261 Arabidopsis thaliana
AT5G42670 10.0kb downstream 10.0kb downstream 12500 true Chr5: 17108262-17120761 Arabidopsis thaliana
AT5G42670 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17110762-17120761 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381733 5261 Brassicaceae View MSA
123837801 5264 Brassicales-Malvales View MSA
124322359 5266 SBM View MSA
124244035 5268 Malvidae View MSA
124050504 5270 Rosid View MSA
123744023 5271 Pentapetalae View MSA
122793938 5272 Eudicot View MSA
122048804 5273 Angiosperm View MSA
121311119 5274 Embryophyte View MSA
123348460 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.802        
cufflinks 4.84        
cufflinks 7.428       High
cufflinks 4.374        
cufflinks 6.207        
cufflinks 4.267       Low

0 Strain