Gene : AT5G45540 A. thaliana TAIR10
Defline:  (1 of 5) PF04578//PF13968 - Protein of unknown function, DUF594 (DUF594) // Domain of unknown function (DUF4220) (DUF4220) Genomic Order:  3929
Name:  ? AT5G45540 Secondary Identifier:  ? PAC:19665488
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G45540 0.5kb upstream 0.5kb upstream 3168 true Chr5: 18458154-18461321 Arabidopsis thaliana
AT5G45540 0.5kb upstream 0.5kb upstream 500 false Chr5: 18460822-18461321 Arabidopsis thaliana
AT5G45540 0.5kb downstream 0.5kb downstream 3168 true Chr5: 18457654-18460821 Arabidopsis thaliana
AT5G45540 0.5kb downstream 0.5kb downstream 500 false Chr5: 18457654-18458153 Arabidopsis thaliana
AT5G45540 1.0kb upstream 1.0kb upstream 3668 true Chr5: 18458154-18461821 Arabidopsis thaliana
AT5G45540 1.0kb upstream 1.0kb upstream 1000 false Chr5: 18460822-18461821 Arabidopsis thaliana
AT5G45540 1.0kb downstream 1.0kb downstream 3668 true Chr5: 18457154-18460821 Arabidopsis thaliana
AT5G45540 1.0kb downstream 1.0kb downstream 1000 false Chr5: 18457154-18458153 Arabidopsis thaliana
AT5G45540 2.0kb upstream 2.0kb upstream 4668 true Chr5: 18458154-18462821 Arabidopsis thaliana
AT5G45540 2.0kb upstream 2.0kb upstream 2000 false Chr5: 18460822-18462821 Arabidopsis thaliana
AT5G45540 2.0kb downstream 2.0kb downstream 4668 true Chr5: 18456154-18460821 Arabidopsis thaliana
AT5G45540 2.0kb downstream 2.0kb downstream 2000 false Chr5: 18456154-18458153 Arabidopsis thaliana
AT5G45540 5.0kb upstream 5.0kb upstream 7668 true Chr5: 18458154-18465821 Arabidopsis thaliana
AT5G45540 5.0kb upstream 5.0kb upstream 5000 false Chr5: 18460822-18465821 Arabidopsis thaliana
AT5G45540 5.0kb downstream 5.0kb downstream 7668 true Chr5: 18453154-18460821 Arabidopsis thaliana
AT5G45540 5.0kb downstream 5.0kb downstream 5000 false Chr5: 18453154-18458153 Arabidopsis thaliana
AT5G45540 10.0kb upstream 10.0kb upstream 12668 true Chr5: 18458154-18470821 Arabidopsis thaliana
AT5G45540 10.0kb upstream 10.0kb upstream 10000 false Chr5: 18460822-18470821 Arabidopsis thaliana
AT5G45540 10.0kb downstream 10.0kb downstream 12668 true Chr5: 18448154-18460821 Arabidopsis thaliana
AT5G45540 10.0kb downstream 10.0kb downstream 10000 false Chr5: 18448154-18458153 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029142 5273 Angiosperm View MSA
122369968 5261 Brassicaceae View MSA
123799875 5264 Brassicales-Malvales View MSA
124349984 5266 SBM View MSA
124254475 5268 Malvidae View MSA
124074186 5270 Rosid View MSA
123752826 5271 Pentapetalae View MSA
122795885 5272 Eudicot View MSA
121350539 5274 Embryophyte View MSA
123381781 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.89        
cufflinks 1.974       High
cufflinks 0.726        
cufflinks 1.643        
cufflinks 0.402       Low
cufflinks 1.669        

0 Strain