Gene : AT5G45530 A. thaliana TAIR10
Defline:  (1 of 5) PF04578//PF13968 - Protein of unknown function, DUF594 (DUF594) // Domain of unknown function (DUF4220) (DUF4220) Genomic Order:  3928
Name:  ? AT5G45530 Secondary Identifier:  ? PAC:19665264
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G45530 0.5kb upstream 0.5kb upstream 3462 true Chr5: 18454316-18457777 Arabidopsis thaliana
AT5G45530 0.5kb upstream 0.5kb upstream 500 false Chr5: 18457278-18457777 Arabidopsis thaliana
AT5G45530 0.5kb downstream 0.5kb downstream 3462 true Chr5: 18453816-18457277 Arabidopsis thaliana
AT5G45530 0.5kb downstream 0.5kb downstream 500 false Chr5: 18453816-18454315 Arabidopsis thaliana
AT5G45530 1.0kb upstream 1.0kb upstream 3962 true Chr5: 18454316-18458277 Arabidopsis thaliana
AT5G45530 1.0kb upstream 1.0kb upstream 1000 false Chr5: 18457278-18458277 Arabidopsis thaliana
AT5G45530 1.0kb downstream 1.0kb downstream 3962 true Chr5: 18453316-18457277 Arabidopsis thaliana
AT5G45530 1.0kb downstream 1.0kb downstream 1000 false Chr5: 18453316-18454315 Arabidopsis thaliana
AT5G45530 2.0kb upstream 2.0kb upstream 4962 true Chr5: 18454316-18459277 Arabidopsis thaliana
AT5G45530 2.0kb upstream 2.0kb upstream 2000 false Chr5: 18457278-18459277 Arabidopsis thaliana
AT5G45530 2.0kb downstream 2.0kb downstream 4962 true Chr5: 18452316-18457277 Arabidopsis thaliana
AT5G45530 2.0kb downstream 2.0kb downstream 2000 false Chr5: 18452316-18454315 Arabidopsis thaliana
AT5G45530 5.0kb upstream 5.0kb upstream 7962 true Chr5: 18454316-18462277 Arabidopsis thaliana
AT5G45530 5.0kb upstream 5.0kb upstream 5000 false Chr5: 18457278-18462277 Arabidopsis thaliana
AT5G45530 5.0kb downstream 5.0kb downstream 7962 true Chr5: 18449316-18457277 Arabidopsis thaliana
AT5G45530 5.0kb downstream 5.0kb downstream 5000 false Chr5: 18449316-18454315 Arabidopsis thaliana
AT5G45530 10.0kb upstream 10.0kb upstream 12962 true Chr5: 18454316-18467277 Arabidopsis thaliana
AT5G45530 10.0kb upstream 10.0kb upstream 10000 false Chr5: 18457278-18467277 Arabidopsis thaliana
AT5G45530 10.0kb downstream 10.0kb downstream 12962 true Chr5: 18444316-18457277 Arabidopsis thaliana
AT5G45530 10.0kb downstream 10.0kb downstream 10000 false Chr5: 18444316-18454315 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029142 5273 Angiosperm View MSA
122371988 5261 Brassicaceae View MSA
123840817 5264 Brassicales-Malvales View MSA
124349984 5266 SBM View MSA
124254475 5268 Malvidae View MSA
124074186 5270 Rosid View MSA
123752826 5271 Pentapetalae View MSA
122795885 5272 Eudicot View MSA
121350539 5274 Embryophyte View MSA
123381781 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.931        
cufflinks 1.85       High
cufflinks 0.738        
cufflinks 1.339        
cufflinks 0.553       Low
cufflinks 1.321        

0 Strain