Gene : AT5G44980 A. thaliana TAIR10
Defline:  (1 of 16) PF00646//PF08387 - F-box domain (F-box) // FBD (FBD) Genomic Order:  3868
Name:  ? AT5G44980 Secondary Identifier:  ? PAC:19668083
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G44980 0.5kb upstream 0.5kb upstream 2475 true Chr5: 18159790-18162264 Arabidopsis thaliana
AT5G44980 0.5kb upstream 0.5kb upstream 500 false Chr5: 18159790-18160289 Arabidopsis thaliana
AT5G44980 0.5kb downstream 0.5kb downstream 2475 true Chr5: 18160290-18162764 Arabidopsis thaliana
AT5G44980 0.5kb downstream 0.5kb downstream 500 false Chr5: 18162265-18162764 Arabidopsis thaliana
AT5G44980 1.0kb upstream 1.0kb upstream 2975 true Chr5: 18159290-18162264 Arabidopsis thaliana
AT5G44980 1.0kb upstream 1.0kb upstream 1000 false Chr5: 18159290-18160289 Arabidopsis thaliana
AT5G44980 1.0kb downstream 1.0kb downstream 2975 true Chr5: 18160290-18163264 Arabidopsis thaliana
AT5G44980 1.0kb downstream 1.0kb downstream 1000 false Chr5: 18162265-18163264 Arabidopsis thaliana
AT5G44980 2.0kb upstream 2.0kb upstream 3975 true Chr5: 18158290-18162264 Arabidopsis thaliana
AT5G44980 2.0kb upstream 2.0kb upstream 2000 false Chr5: 18158290-18160289 Arabidopsis thaliana
AT5G44980 2.0kb downstream 2.0kb downstream 3975 true Chr5: 18160290-18164264 Arabidopsis thaliana
AT5G44980 2.0kb downstream 2.0kb downstream 2000 false Chr5: 18162265-18164264 Arabidopsis thaliana
AT5G44980 5.0kb upstream 5.0kb upstream 6975 true Chr5: 18155290-18162264 Arabidopsis thaliana
AT5G44980 5.0kb upstream 5.0kb upstream 5000 false Chr5: 18155290-18160289 Arabidopsis thaliana
AT5G44980 5.0kb downstream 5.0kb downstream 6975 true Chr5: 18160290-18167264 Arabidopsis thaliana
AT5G44980 5.0kb downstream 5.0kb downstream 5000 false Chr5: 18162265-18167264 Arabidopsis thaliana
AT5G44980 10.0kb upstream 10.0kb upstream 11975 true Chr5: 18150290-18162264 Arabidopsis thaliana
AT5G44980 10.0kb upstream 10.0kb upstream 10000 false Chr5: 18150290-18160289 Arabidopsis thaliana
AT5G44980 10.0kb downstream 10.0kb downstream 11975 true Chr5: 18160290-18172264 Arabidopsis thaliana
AT5G44980 10.0kb downstream 10.0kb downstream 10000 false Chr5: 18162265-18172264 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122338722 5261 Brassicaceae View MSA
123779273 5264 Brassicales-Malvales View MSA
124277603 5266 SBM View MSA
124132790 5268 Malvidae View MSA
123861051 5270 Rosid View MSA
123753592 5271 Pentapetalae View MSA
122797964 5272 Eudicot View MSA
122050940 5273 Angiosperm View MSA
121351679 5274 Embryophyte View MSA
123382274 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.705       High
cufflinks 1.35        
cufflinks 0.496       Low
cufflinks 1.115        
cufflinks 0.792        
cufflinks 1.255        

0 Strain