Gene : PDF1.2 A. thaliana TAIR10
Primary Identifier:  ? AT5G44420 Defline:  (1 of 7) PTHR33147//PTHR33147:SF4 - FAMILY NOT NAMED // DEFENSIN-LIKE PROTEIN 13-RELATED
Genomic Order:  3802 Name:  ? AT5G44420
Secondary Identifier:  ? PAC:19672878
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G44420 0.5kb upstream 0.5kb upstream 1030 true Chr5: 17907069-17908098 Arabidopsis thaliana
AT5G44420 0.5kb upstream 0.5kb upstream 500 false Chr5: 17907599-17908098 Arabidopsis thaliana
AT5G44420 0.5kb downstream 0.5kb downstream 1030 true Chr5: 17906569-17907598 Arabidopsis thaliana
AT5G44420 0.5kb downstream 0.5kb downstream 500 false Chr5: 17906569-17907068 Arabidopsis thaliana
AT5G44420 1.0kb upstream 1.0kb upstream 1530 true Chr5: 17907069-17908598 Arabidopsis thaliana
AT5G44420 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17907599-17908598 Arabidopsis thaliana
AT5G44420 1.0kb downstream 1.0kb downstream 1530 true Chr5: 17906069-17907598 Arabidopsis thaliana
AT5G44420 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17906069-17907068 Arabidopsis thaliana
AT5G44420 2.0kb upstream 2.0kb upstream 2530 true Chr5: 17907069-17909598 Arabidopsis thaliana
AT5G44420 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17907599-17909598 Arabidopsis thaliana
AT5G44420 2.0kb downstream 2.0kb downstream 2530 true Chr5: 17905069-17907598 Arabidopsis thaliana
AT5G44420 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17905069-17907068 Arabidopsis thaliana
AT5G44420 5.0kb upstream 5.0kb upstream 5530 true Chr5: 17907069-17912598 Arabidopsis thaliana
AT5G44420 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17907599-17912598 Arabidopsis thaliana
AT5G44420 5.0kb downstream 5.0kb downstream 5530 true Chr5: 17902069-17907598 Arabidopsis thaliana
AT5G44420 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17902069-17907068 Arabidopsis thaliana
AT5G44420 10.0kb upstream 10.0kb upstream 10530 true Chr5: 17907069-17917598 Arabidopsis thaliana
AT5G44420 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17907599-17917598 Arabidopsis thaliana
AT5G44420 10.0kb downstream 10.0kb downstream 10530 true Chr5: 17897069-17907598 Arabidopsis thaliana
AT5G44420 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17897069-17907068 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381655 5261 Brassicaceae View MSA
123803361 5264 Brassicales-Malvales View MSA
124300477 5266 SBM View MSA
124151657 5268 Malvidae View MSA
123877047 5270 Rosid View MSA
123744676 5271 Pentapetalae View MSA
122797517 5272 Eudicot View MSA
122049693 5273 Angiosperm View MSA
121311546 5274 Embryophyte View MSA
123348829 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 216.284     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 28.867     High  
cufflinks 0.087     Low  
cufflinks 213.59     High  
cufflinks 0.029     Low Low

0 Strain