Gene : AT5G44400 A. thaliana TAIR10
Defline:  (1 of 5) PTHR32448//PTHR32448:SF11 - FAMILY NOT NAMED // BERBERINE BRIDGE ENZYME-RELATED Genomic Order:  3800
Name:  ? AT5G44400 Secondary Identifier:  ? PAC:19669545
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G44400 0.5kb upstream 0.5kb upstream 2787 true Chr5: 17886194-17888980 Arabidopsis thaliana
AT5G44400 0.5kb upstream 0.5kb upstream 500 false Chr5: 17888481-17888980 Arabidopsis thaliana
AT5G44400 0.5kb downstream 0.5kb downstream 2787 true Chr5: 17885694-17888480 Arabidopsis thaliana
AT5G44400 0.5kb downstream 0.5kb downstream 500 false Chr5: 17885694-17886193 Arabidopsis thaliana
AT5G44400 1.0kb upstream 1.0kb upstream 3287 true Chr5: 17886194-17889480 Arabidopsis thaliana
AT5G44400 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17888481-17889480 Arabidopsis thaliana
AT5G44400 1.0kb downstream 1.0kb downstream 3287 true Chr5: 17885194-17888480 Arabidopsis thaliana
AT5G44400 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17885194-17886193 Arabidopsis thaliana
AT5G44400 2.0kb upstream 2.0kb upstream 4287 true Chr5: 17886194-17890480 Arabidopsis thaliana
AT5G44400 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17888481-17890480 Arabidopsis thaliana
AT5G44400 2.0kb downstream 2.0kb downstream 4287 true Chr5: 17884194-17888480 Arabidopsis thaliana
AT5G44400 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17884194-17886193 Arabidopsis thaliana
AT5G44400 5.0kb upstream 5.0kb upstream 7287 true Chr5: 17886194-17893480 Arabidopsis thaliana
AT5G44400 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17888481-17893480 Arabidopsis thaliana
AT5G44400 5.0kb downstream 5.0kb downstream 7287 true Chr5: 17881194-17888480 Arabidopsis thaliana
AT5G44400 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17881194-17886193 Arabidopsis thaliana
AT5G44400 10.0kb upstream 10.0kb upstream 12287 true Chr5: 17886194-17898480 Arabidopsis thaliana
AT5G44400 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17888481-17898480 Arabidopsis thaliana
AT5G44400 10.0kb downstream 10.0kb downstream 12287 true Chr5: 17876194-17888480 Arabidopsis thaliana
AT5G44400 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17876194-17886193 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380861 5261 Brassicaceae View MSA
123802938 5264 Brassicales-Malvales View MSA
124350887 5266 SBM View MSA
124245179 5268 Malvidae View MSA
124070066 5270 Rosid View MSA
123750008 5271 Pentapetalae View MSA
122797707 5272 Eudicot View MSA
122049918 5273 Angiosperm View MSA
121351151 5274 Embryophyte View MSA
123426970 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.289        
cufflinks 110.796     High  
cufflinks 9.93       Low
cufflinks 115.953     High  
cufflinks 10.302        
cufflinks 128.438     High  

0 Strain