Gene : AT5G47720 A. thaliana TAIR10
Defline:  (1 of 2) 2.3.1.9 - Acetyl-CoA C-acetyltransferase / Acetoacetyl-CoA thiolase Genomic Order:  4166
Name:  ? AT5G47720 Secondary Identifier:  ? PAC:19669834
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana ILEUDEG-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-5910 Arabidopsis thaliana pathologic  
Athaliana PWY-922 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G47720 0.5kb upstream 0.5kb upstream 3381 true Chr5: 19331047-19334427 Arabidopsis thaliana
AT5G47720 0.5kb upstream 0.5kb upstream 500 false Chr5: 19331047-19331546 Arabidopsis thaliana
AT5G47720 0.5kb downstream 0.5kb downstream 3381 true Chr5: 19331547-19334927 Arabidopsis thaliana
AT5G47720 0.5kb downstream 0.5kb downstream 500 false Chr5: 19334428-19334927 Arabidopsis thaliana
AT5G47720 1.0kb upstream 1.0kb upstream 3881 true Chr5: 19330547-19334427 Arabidopsis thaliana
AT5G47720 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19330547-19331546 Arabidopsis thaliana
AT5G47720 1.0kb downstream 1.0kb downstream 3881 true Chr5: 19331547-19335427 Arabidopsis thaliana
AT5G47720 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19334428-19335427 Arabidopsis thaliana
AT5G47720 2.0kb upstream 2.0kb upstream 4881 true Chr5: 19329547-19334427 Arabidopsis thaliana
AT5G47720 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19329547-19331546 Arabidopsis thaliana
AT5G47720 2.0kb downstream 2.0kb downstream 4881 true Chr5: 19331547-19336427 Arabidopsis thaliana
AT5G47720 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19334428-19336427 Arabidopsis thaliana
AT5G47720 5.0kb upstream 5.0kb upstream 7881 true Chr5: 19326547-19334427 Arabidopsis thaliana
AT5G47720 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19326547-19331546 Arabidopsis thaliana
AT5G47720 5.0kb downstream 5.0kb downstream 7881 true Chr5: 19331547-19339427 Arabidopsis thaliana
AT5G47720 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19334428-19339427 Arabidopsis thaliana
AT5G47720 10.0kb upstream 10.0kb upstream 12881 true Chr5: 19321547-19334427 Arabidopsis thaliana
AT5G47720 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19321547-19331546 Arabidopsis thaliana
AT5G47720 10.0kb downstream 10.0kb downstream 12881 true Chr5: 19331547-19344427 Arabidopsis thaliana
AT5G47720 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19334428-19344427 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366362 5261 Brassicaceae View MSA
123830193 5264 Brassicales-Malvales View MSA
124338092 5266 SBM View MSA
124247085 5268 Malvidae View MSA
124066506 5270 Rosid View MSA
123747270 5271 Pentapetalae View MSA
122788364 5272 Eudicot View MSA
122045789 5273 Angiosperm View MSA
121344005 5274 Embryophyte View MSA
123427573 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.797       Low
cufflinks 8.187        
cufflinks 1.089        
cufflinks 8.202        
cufflinks 1.253        
cufflinks 6.328        

0 Strain