Gene : AT5G47700 A. thaliana TAIR10
Defline:  (1 of 6) K02942 - large subunit ribosomal protein LP1 (RP-LP1, RPLP1) Genomic Order:  4164
Name:  ? AT5G47700 Secondary Identifier:  ? PAC:19670118
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G47700 0.5kb upstream 0.5kb upstream 1681 true Chr5: 19327803-19329483 Arabidopsis thaliana
AT5G47700 0.5kb upstream 0.5kb upstream 500 false Chr5: 19328984-19329483 Arabidopsis thaliana
AT5G47700 0.5kb downstream 0.5kb downstream 1681 true Chr5: 19327303-19328983 Arabidopsis thaliana
AT5G47700 0.5kb downstream 0.5kb downstream 500 false Chr5: 19327303-19327802 Arabidopsis thaliana
AT5G47700 1.0kb upstream 1.0kb upstream 2181 true Chr5: 19327803-19329983 Arabidopsis thaliana
AT5G47700 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19328984-19329983 Arabidopsis thaliana
AT5G47700 1.0kb downstream 1.0kb downstream 2181 true Chr5: 19326803-19328983 Arabidopsis thaliana
AT5G47700 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19326803-19327802 Arabidopsis thaliana
AT5G47700 2.0kb upstream 2.0kb upstream 3181 true Chr5: 19327803-19330983 Arabidopsis thaliana
AT5G47700 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19328984-19330983 Arabidopsis thaliana
AT5G47700 2.0kb downstream 2.0kb downstream 3181 true Chr5: 19325803-19328983 Arabidopsis thaliana
AT5G47700 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19325803-19327802 Arabidopsis thaliana
AT5G47700 5.0kb upstream 5.0kb upstream 6181 true Chr5: 19327803-19333983 Arabidopsis thaliana
AT5G47700 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19328984-19333983 Arabidopsis thaliana
AT5G47700 5.0kb downstream 5.0kb downstream 6181 true Chr5: 19322803-19328983 Arabidopsis thaliana
AT5G47700 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19322803-19327802 Arabidopsis thaliana
AT5G47700 10.0kb upstream 10.0kb upstream 11181 true Chr5: 19327803-19338983 Arabidopsis thaliana
AT5G47700 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19328984-19338983 Arabidopsis thaliana
AT5G47700 10.0kb downstream 10.0kb downstream 11181 true Chr5: 19317803-19328983 Arabidopsis thaliana
AT5G47700 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19317803-19327802 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380631 5261 Brassicaceae View MSA
123840228 5264 Brassicales-Malvales View MSA
124346847 5266 SBM View MSA
124250249 5268 Malvidae View MSA
124074239 5270 Rosid View MSA
123751356 5271 Pentapetalae View MSA
122787708 5272 Eudicot View MSA
122049908 5273 Angiosperm View MSA
121345630 5274 Embryophyte View MSA
123424644 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 44.192     High  
cufflinks 80.621     High  
cufflinks 43.466     High  
cufflinks 77.763     High  
cufflinks 35.027     High Low
cufflinks 89.614     High High

0 Strain