Gene : AT5G47680 A. thaliana TAIR10
Defline:  (1 of 1) 2.1.1.221 - tRNA (guanine(9)-N(1))-methyltransferase / tRNA m(1)G(9)-methyltransferase Genomic Order:  4162
Name:  ? AT5G47680 Secondary Identifier:  ? PAC:19672693
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G47680 0.5kb upstream 0.5kb upstream 1891 true Chr5: 19316132-19318022 Arabidopsis thaliana
AT5G47680 0.5kb upstream 0.5kb upstream 500 false Chr5: 19317523-19318022 Arabidopsis thaliana
AT5G47680 0.5kb downstream 0.5kb downstream 1891 true Chr5: 19315632-19317522 Arabidopsis thaliana
AT5G47680 0.5kb downstream 0.5kb downstream 500 false Chr5: 19315632-19316131 Arabidopsis thaliana
AT5G47680 1.0kb upstream 1.0kb upstream 2391 true Chr5: 19316132-19318522 Arabidopsis thaliana
AT5G47680 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19317523-19318522 Arabidopsis thaliana
AT5G47680 1.0kb downstream 1.0kb downstream 2391 true Chr5: 19315132-19317522 Arabidopsis thaliana
AT5G47680 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19315132-19316131 Arabidopsis thaliana
AT5G47680 2.0kb upstream 2.0kb upstream 3391 true Chr5: 19316132-19319522 Arabidopsis thaliana
AT5G47680 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19317523-19319522 Arabidopsis thaliana
AT5G47680 2.0kb downstream 2.0kb downstream 3391 true Chr5: 19314132-19317522 Arabidopsis thaliana
AT5G47680 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19314132-19316131 Arabidopsis thaliana
AT5G47680 5.0kb upstream 5.0kb upstream 6391 true Chr5: 19316132-19322522 Arabidopsis thaliana
AT5G47680 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19317523-19322522 Arabidopsis thaliana
AT5G47680 5.0kb downstream 5.0kb downstream 6391 true Chr5: 19311132-19317522 Arabidopsis thaliana
AT5G47680 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19311132-19316131 Arabidopsis thaliana
AT5G47680 10.0kb upstream 10.0kb upstream 11391 true Chr5: 19316132-19327522 Arabidopsis thaliana
AT5G47680 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19317523-19327522 Arabidopsis thaliana
AT5G47680 10.0kb downstream 10.0kb downstream 11391 true Chr5: 19306132-19317522 Arabidopsis thaliana
AT5G47680 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19306132-19316131 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366916 5261 Brassicaceae View MSA
123840248 5264 Brassicales-Malvales View MSA
124343176 5266 SBM View MSA
124238597 5268 Malvidae View MSA
124050297 5270 Rosid View MSA
123736559 5271 Pentapetalae View MSA
122793460 5272 Eudicot View MSA
122046397 5273 Angiosperm View MSA
121347986 5274 Embryophyte View MSA
123427480 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.21        
cufflinks 26.709        
cufflinks 18.227        
cufflinks 28.042        
cufflinks 17.015       Low
cufflinks 27.877        

0 Strain