Gene : AT5G47490 A. thaliana TAIR10
Defline:  (1 of 2) PTHR13402 - RGPR-RELATED Genomic Order:  4142
Name:  ? AT5G47490 Secondary Identifier:  ? PAC:19666157
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G47490 0.5kb upstream 0.5kb upstream 6626 true Chr5: 19264175-19270800 Arabidopsis thaliana
AT5G47490 0.5kb upstream 0.5kb upstream 500 false Chr5: 19264175-19264674 Arabidopsis thaliana
AT5G47490 0.5kb downstream 0.5kb downstream 6626 true Chr5: 19264675-19271300 Arabidopsis thaliana
AT5G47490 0.5kb downstream 0.5kb downstream 500 false Chr5: 19270801-19271300 Arabidopsis thaliana
AT5G47490 1.0kb upstream 1.0kb upstream 7126 true Chr5: 19263675-19270800 Arabidopsis thaliana
AT5G47490 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19263675-19264674 Arabidopsis thaliana
AT5G47490 1.0kb downstream 1.0kb downstream 7126 true Chr5: 19264675-19271800 Arabidopsis thaliana
AT5G47490 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19270801-19271800 Arabidopsis thaliana
AT5G47490 2.0kb upstream 2.0kb upstream 8126 true Chr5: 19262675-19270800 Arabidopsis thaliana
AT5G47490 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19262675-19264674 Arabidopsis thaliana
AT5G47490 2.0kb downstream 2.0kb downstream 8126 true Chr5: 19264675-19272800 Arabidopsis thaliana
AT5G47490 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19270801-19272800 Arabidopsis thaliana
AT5G47490 5.0kb upstream 5.0kb upstream 11126 true Chr5: 19259675-19270800 Arabidopsis thaliana
AT5G47490 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19259675-19264674 Arabidopsis thaliana
AT5G47490 5.0kb downstream 5.0kb downstream 11126 true Chr5: 19264675-19275800 Arabidopsis thaliana
AT5G47490 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19270801-19275800 Arabidopsis thaliana
AT5G47490 10.0kb upstream 10.0kb upstream 16126 true Chr5: 19254675-19270800 Arabidopsis thaliana
AT5G47490 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19254675-19264674 Arabidopsis thaliana
AT5G47490 10.0kb downstream 10.0kb downstream 16126 true Chr5: 19264675-19280800 Arabidopsis thaliana
AT5G47490 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19270801-19280800 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375628 5261 Brassicaceae View MSA
123829869 5264 Brassicales-Malvales View MSA
124339494 5266 SBM View MSA
124254140 5268 Malvidae View MSA
124072884 5270 Rosid View MSA
123746128 5271 Pentapetalae View MSA
122793039 5272 Eudicot View MSA
122051498 5273 Angiosperm View MSA
121349781 5274 Embryophyte View MSA
123425826 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.157        
cufflinks 5.412       Low
cufflinks 6.391        
cufflinks 6.034        
cufflinks 5.816        
cufflinks 6.963       High

0 Strain