Gene : AT5G47480 A. thaliana TAIR10
Defline:  (1 of 2) PTHR13402 - RGPR-RELATED Genomic Order:  4141
Name:  ? AT5G47480 Secondary Identifier:  ? PAC:19668810
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G47480 0.5kb upstream 0.5kb upstream 6505 true Chr5: 19256920-19263424 Arabidopsis thaliana
AT5G47480 0.5kb upstream 0.5kb upstream 500 false Chr5: 19256920-19257419 Arabidopsis thaliana
AT5G47480 0.5kb downstream 0.5kb downstream 6505 true Chr5: 19257420-19263924 Arabidopsis thaliana
AT5G47480 0.5kb downstream 0.5kb downstream 500 false Chr5: 19263425-19263924 Arabidopsis thaliana
AT5G47480 1.0kb upstream 1.0kb upstream 7005 true Chr5: 19256420-19263424 Arabidopsis thaliana
AT5G47480 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19256420-19257419 Arabidopsis thaliana
AT5G47480 1.0kb downstream 1.0kb downstream 7005 true Chr5: 19257420-19264424 Arabidopsis thaliana
AT5G47480 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19263425-19264424 Arabidopsis thaliana
AT5G47480 2.0kb upstream 2.0kb upstream 8005 true Chr5: 19255420-19263424 Arabidopsis thaliana
AT5G47480 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19255420-19257419 Arabidopsis thaliana
AT5G47480 2.0kb downstream 2.0kb downstream 8005 true Chr5: 19257420-19265424 Arabidopsis thaliana
AT5G47480 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19263425-19265424 Arabidopsis thaliana
AT5G47480 5.0kb upstream 5.0kb upstream 11005 true Chr5: 19252420-19263424 Arabidopsis thaliana
AT5G47480 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19252420-19257419 Arabidopsis thaliana
AT5G47480 5.0kb downstream 5.0kb downstream 11005 true Chr5: 19257420-19268424 Arabidopsis thaliana
AT5G47480 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19263425-19268424 Arabidopsis thaliana
AT5G47480 10.0kb upstream 10.0kb upstream 16005 true Chr5: 19247420-19263424 Arabidopsis thaliana
AT5G47480 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19247420-19257419 Arabidopsis thaliana
AT5G47480 10.0kb downstream 10.0kb downstream 16005 true Chr5: 19257420-19273424 Arabidopsis thaliana
AT5G47480 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19263425-19273424 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375628 5261 Brassicaceae View MSA
123829869 5264 Brassicales-Malvales View MSA
124339494 5266 SBM View MSA
124254140 5268 Malvidae View MSA
124072884 5270 Rosid View MSA
123746128 5271 Pentapetalae View MSA
122793039 5272 Eudicot View MSA
122051498 5273 Angiosperm View MSA
121349781 5274 Embryophyte View MSA
123425826 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.909        
cufflinks 21.874        
cufflinks 14.319       Low
cufflinks 24.046       High
cufflinks 15.943        
cufflinks 23.118        

0 Strain