Gene : AT5G47390 A. thaliana TAIR10
Defline:  (1 of 1) PTHR24078:SF280 - MYB TRANSCRIPTION FACTOR Genomic Order:  4131
Name:  ? AT5G47390 Secondary Identifier:  ? PAC:19669162
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G47390 0.5kb upstream 0.5kb upstream 2569 true Chr5: 19226290-19228858 Arabidopsis thaliana
AT5G47390 0.5kb upstream 0.5kb upstream 500 false Chr5: 19226290-19226789 Arabidopsis thaliana
AT5G47390 0.5kb downstream 0.5kb downstream 2569 true Chr5: 19226790-19229358 Arabidopsis thaliana
AT5G47390 0.5kb downstream 0.5kb downstream 500 false Chr5: 19228859-19229358 Arabidopsis thaliana
AT5G47390 1.0kb upstream 1.0kb upstream 3069 true Chr5: 19225790-19228858 Arabidopsis thaliana
AT5G47390 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19225790-19226789 Arabidopsis thaliana
AT5G47390 1.0kb downstream 1.0kb downstream 3069 true Chr5: 19226790-19229858 Arabidopsis thaliana
AT5G47390 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19228859-19229858 Arabidopsis thaliana
AT5G47390 2.0kb upstream 2.0kb upstream 4069 true Chr5: 19224790-19228858 Arabidopsis thaliana
AT5G47390 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19224790-19226789 Arabidopsis thaliana
AT5G47390 2.0kb downstream 2.0kb downstream 4069 true Chr5: 19226790-19230858 Arabidopsis thaliana
AT5G47390 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19228859-19230858 Arabidopsis thaliana
AT5G47390 5.0kb upstream 5.0kb upstream 7069 true Chr5: 19221790-19228858 Arabidopsis thaliana
AT5G47390 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19221790-19226789 Arabidopsis thaliana
AT5G47390 5.0kb downstream 5.0kb downstream 7069 true Chr5: 19226790-19233858 Arabidopsis thaliana
AT5G47390 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19228859-19233858 Arabidopsis thaliana
AT5G47390 10.0kb upstream 10.0kb upstream 12069 true Chr5: 19216790-19228858 Arabidopsis thaliana
AT5G47390 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19216790-19226789 Arabidopsis thaliana
AT5G47390 10.0kb downstream 10.0kb downstream 12069 true Chr5: 19226790-19238858 Arabidopsis thaliana
AT5G47390 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19228859-19238858 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364669 5261 Brassicaceae View MSA
123838622 5264 Brassicales-Malvales View MSA
124344962 5266 SBM View MSA
124251294 5268 Malvidae View MSA
124065296 5270 Rosid View MSA
123744920 5271 Pentapetalae View MSA
122787760 5272 Eudicot View MSA
122050347 5273 Angiosperm View MSA
121350990 5274 Embryophyte View MSA
123426863 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.923        
cufflinks 11.76        
cufflinks 14.803        
cufflinks 12.755        
cufflinks 17.746       High
cufflinks 10.507       Low

0 Strain