Gene : AT5G46720 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12510//PTHR12510:SF7 - TROPONIN C-AKIN-1 PROTEIN // AIG2-LIKE (AVIRULENCE INDUCED GENE) FAMILY PROTEIN Genomic Order:  4054
Name:  ? AT5G46720 Secondary Identifier:  ? PAC:19667928
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G46720 0.5kb upstream 0.5kb upstream 1081 true Chr5: 18958669-18959749 Arabidopsis thaliana
AT5G46720 0.5kb upstream 0.5kb upstream 500 false Chr5: 18958669-18959168 Arabidopsis thaliana
AT5G46720 0.5kb downstream 0.5kb downstream 1081 true Chr5: 18959169-18960249 Arabidopsis thaliana
AT5G46720 0.5kb downstream 0.5kb downstream 500 false Chr5: 18959750-18960249 Arabidopsis thaliana
AT5G46720 1.0kb upstream 1.0kb upstream 1581 true Chr5: 18958169-18959749 Arabidopsis thaliana
AT5G46720 1.0kb upstream 1.0kb upstream 1000 false Chr5: 18958169-18959168 Arabidopsis thaliana
AT5G46720 1.0kb downstream 1.0kb downstream 1581 true Chr5: 18959169-18960749 Arabidopsis thaliana
AT5G46720 1.0kb downstream 1.0kb downstream 1000 false Chr5: 18959750-18960749 Arabidopsis thaliana
AT5G46720 2.0kb upstream 2.0kb upstream 2581 true Chr5: 18957169-18959749 Arabidopsis thaliana
AT5G46720 2.0kb upstream 2.0kb upstream 2000 false Chr5: 18957169-18959168 Arabidopsis thaliana
AT5G46720 2.0kb downstream 2.0kb downstream 2581 true Chr5: 18959169-18961749 Arabidopsis thaliana
AT5G46720 2.0kb downstream 2.0kb downstream 2000 false Chr5: 18959750-18961749 Arabidopsis thaliana
AT5G46720 5.0kb upstream 5.0kb upstream 5581 true Chr5: 18954169-18959749 Arabidopsis thaliana
AT5G46720 5.0kb upstream 5.0kb upstream 5000 false Chr5: 18954169-18959168 Arabidopsis thaliana
AT5G46720 5.0kb downstream 5.0kb downstream 5581 true Chr5: 18959169-18964749 Arabidopsis thaliana
AT5G46720 5.0kb downstream 5.0kb downstream 5000 false Chr5: 18959750-18964749 Arabidopsis thaliana
AT5G46720 10.0kb upstream 10.0kb upstream 10581 true Chr5: 18949169-18959749 Arabidopsis thaliana
AT5G46720 10.0kb upstream 10.0kb upstream 10000 false Chr5: 18949169-18959168 Arabidopsis thaliana
AT5G46720 10.0kb downstream 10.0kb downstream 10581 true Chr5: 18959169-18969749 Arabidopsis thaliana
AT5G46720 10.0kb downstream 10.0kb downstream 10000 false Chr5: 18959750-18969749 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363956 5261 Brassicaceae View MSA
123834816 5264 Brassicales-Malvales View MSA
124350847 5266 SBM View MSA
124246677 5268 Malvidae View MSA
124068981 5270 Rosid View MSA
123739827 5271 Pentapetalae View MSA
122789137 5272 Eudicot View MSA
122047462 5273 Angiosperm View MSA
121349435 5274 Embryophyte View MSA
123425179 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.892       High
cufflinks 2.092       Low
cufflinks 2.692        
cufflinks 2.286        
cufflinks 2.399        
cufflinks 2.663        

0 Strain