Gene : PRP39-2 A. thaliana TAIR10
Primary Identifier:  ? AT5G46400 Defline:  (1 of 1) PTHR17204//PTHR17204:SF18 - PRE-MRNA PROCESSING PROTEIN PRP39-RELATED // PRE-MRNA-PROCESSING FACTOR 39
Genomic Order:  4022 Name:  ? AT5G46400
Secondary Identifier:  ? PAC:19672382
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G46400 0.5kb upstream 0.5kb upstream 5119 true Chr5: 18819532-18824650 Arabidopsis thaliana
AT5G46400 0.5kb upstream 0.5kb upstream 500 false Chr5: 18819532-18820031 Arabidopsis thaliana
AT5G46400 0.5kb downstream 0.5kb downstream 5119 true Chr5: 18820032-18825150 Arabidopsis thaliana
AT5G46400 0.5kb downstream 0.5kb downstream 500 false Chr5: 18824651-18825150 Arabidopsis thaliana
AT5G46400 1.0kb upstream 1.0kb upstream 5619 true Chr5: 18819032-18824650 Arabidopsis thaliana
AT5G46400 1.0kb upstream 1.0kb upstream 1000 false Chr5: 18819032-18820031 Arabidopsis thaliana
AT5G46400 1.0kb downstream 1.0kb downstream 5619 true Chr5: 18820032-18825650 Arabidopsis thaliana
AT5G46400 1.0kb downstream 1.0kb downstream 1000 false Chr5: 18824651-18825650 Arabidopsis thaliana
AT5G46400 2.0kb upstream 2.0kb upstream 6619 true Chr5: 18818032-18824650 Arabidopsis thaliana
AT5G46400 2.0kb upstream 2.0kb upstream 2000 false Chr5: 18818032-18820031 Arabidopsis thaliana
AT5G46400 2.0kb downstream 2.0kb downstream 6619 true Chr5: 18820032-18826650 Arabidopsis thaliana
AT5G46400 2.0kb downstream 2.0kb downstream 2000 false Chr5: 18824651-18826650 Arabidopsis thaliana
AT5G46400 5.0kb upstream 5.0kb upstream 9619 true Chr5: 18815032-18824650 Arabidopsis thaliana
AT5G46400 5.0kb upstream 5.0kb upstream 5000 false Chr5: 18815032-18820031 Arabidopsis thaliana
AT5G46400 5.0kb downstream 5.0kb downstream 9619 true Chr5: 18820032-18829650 Arabidopsis thaliana
AT5G46400 5.0kb downstream 5.0kb downstream 5000 false Chr5: 18824651-18829650 Arabidopsis thaliana
AT5G46400 10.0kb upstream 10.0kb upstream 14619 true Chr5: 18810032-18824650 Arabidopsis thaliana
AT5G46400 10.0kb upstream 10.0kb upstream 10000 false Chr5: 18810032-18820031 Arabidopsis thaliana
AT5G46400 10.0kb downstream 10.0kb downstream 14619 true Chr5: 18820032-18834650 Arabidopsis thaliana
AT5G46400 10.0kb downstream 10.0kb downstream 10000 false Chr5: 18824651-18834650 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363665 5261 Brassicaceae View MSA
123829363 5264 Brassicales-Malvales View MSA
124338828 5266 SBM View MSA
124244228 5268 Malvidae View MSA
124069199 5270 Rosid View MSA
123753236 5271 Pentapetalae View MSA
122790404 5272 Eudicot View MSA
122048891 5273 Angiosperm View MSA
121349849 5274 Embryophyte View MSA
123426942 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.407       Low
cufflinks 5.062        
cufflinks 3.542        
cufflinks 5.379       High
cufflinks 4.044        
cufflinks 4.428        

0 Strain