Gene : AT5G46290 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11712//PTHR11712:SF226 - POLYKETIDE SYNTHASE-RELATED // 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE I, CHLOROPLASTIC Genomic Order:  4010
Name:  ? AT5G46290 Secondary Identifier:  ? PAC:19667568
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana FASYN-ELONG-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-5156 Arabidopsis thaliana pathologic  
Athaliana PWY-5971 Arabidopsis thaliana pathologic  
Athaliana PWY-5989 Arabidopsis thaliana pathologic  
Athaliana PWY-6282 Arabidopsis thaliana pathologic  
Athaliana PWY-7388 Arabidopsis thaliana pathologic  
Athaliana PWY-7663 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G46290 0.5kb upstream 0.5kb upstream 3157 true Chr5: 18774086-18777242 Arabidopsis thaliana
AT5G46290 0.5kb upstream 0.5kb upstream 500 false Chr5: 18776743-18777242 Arabidopsis thaliana
AT5G46290 0.5kb downstream 0.5kb downstream 3157 true Chr5: 18773586-18776742 Arabidopsis thaliana
AT5G46290 0.5kb downstream 0.5kb downstream 500 false Chr5: 18773586-18774085 Arabidopsis thaliana
AT5G46290 1.0kb upstream 1.0kb upstream 3657 true Chr5: 18774086-18777742 Arabidopsis thaliana
AT5G46290 1.0kb upstream 1.0kb upstream 1000 false Chr5: 18776743-18777742 Arabidopsis thaliana
AT5G46290 1.0kb downstream 1.0kb downstream 3657 true Chr5: 18773086-18776742 Arabidopsis thaliana
AT5G46290 1.0kb downstream 1.0kb downstream 1000 false Chr5: 18773086-18774085 Arabidopsis thaliana
AT5G46290 2.0kb upstream 2.0kb upstream 4657 true Chr5: 18774086-18778742 Arabidopsis thaliana
AT5G46290 2.0kb upstream 2.0kb upstream 2000 false Chr5: 18776743-18778742 Arabidopsis thaliana
AT5G46290 2.0kb downstream 2.0kb downstream 4657 true Chr5: 18772086-18776742 Arabidopsis thaliana
AT5G46290 2.0kb downstream 2.0kb downstream 2000 false Chr5: 18772086-18774085 Arabidopsis thaliana
AT5G46290 5.0kb upstream 5.0kb upstream 7657 true Chr5: 18774086-18781742 Arabidopsis thaliana
AT5G46290 5.0kb upstream 5.0kb upstream 5000 false Chr5: 18776743-18781742 Arabidopsis thaliana
AT5G46290 5.0kb downstream 5.0kb downstream 7657 true Chr5: 18769086-18776742 Arabidopsis thaliana
AT5G46290 5.0kb downstream 5.0kb downstream 5000 false Chr5: 18769086-18774085 Arabidopsis thaliana
AT5G46290 10.0kb upstream 10.0kb upstream 12657 true Chr5: 18774086-18786742 Arabidopsis thaliana
AT5G46290 10.0kb upstream 10.0kb upstream 10000 false Chr5: 18776743-18786742 Arabidopsis thaliana
AT5G46290 10.0kb downstream 10.0kb downstream 12657 true Chr5: 18764086-18776742 Arabidopsis thaliana
AT5G46290 10.0kb downstream 10.0kb downstream 10000 false Chr5: 18764086-18774085 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363213 5261 Brassicaceae View MSA
123833977 5264 Brassicales-Malvales View MSA
124343776 5266 SBM View MSA
124240584 5268 Malvidae View MSA
124064004 5270 Rosid View MSA
123747178 5271 Pentapetalae View MSA
122792015 5272 Eudicot View MSA
122044089 5273 Angiosperm View MSA
121347391 5274 Embryophyte View MSA
123426303 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.293        
cufflinks 12.08       Low
cufflinks 17.534        
cufflinks 14.218        
cufflinks 11.862       Low
cufflinks 19.425       High

0 Strain