Gene : AT5G46230 A. thaliana TAIR10
Defline:  (1 of 22) PF04398 - Protein of unknown function, DUF538 (DUF538) Genomic Order:  4004
Name:  ? AT5G46230 Secondary Identifier:  ? PAC:19665489
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G46230 0.5kb upstream 0.5kb upstream 1106 true Chr5: 18742440-18743545 Arabidopsis thaliana
AT5G46230 0.5kb upstream 0.5kb upstream 500 false Chr5: 18743046-18743545 Arabidopsis thaliana
AT5G46230 0.5kb downstream 0.5kb downstream 1106 true Chr5: 18741940-18743045 Arabidopsis thaliana
AT5G46230 0.5kb downstream 0.5kb downstream 500 false Chr5: 18741940-18742439 Arabidopsis thaliana
AT5G46230 1.0kb upstream 1.0kb upstream 1606 true Chr5: 18742440-18744045 Arabidopsis thaliana
AT5G46230 1.0kb upstream 1.0kb upstream 1000 false Chr5: 18743046-18744045 Arabidopsis thaliana
AT5G46230 1.0kb downstream 1.0kb downstream 1606 true Chr5: 18741440-18743045 Arabidopsis thaliana
AT5G46230 1.0kb downstream 1.0kb downstream 1000 false Chr5: 18741440-18742439 Arabidopsis thaliana
AT5G46230 2.0kb upstream 2.0kb upstream 2606 true Chr5: 18742440-18745045 Arabidopsis thaliana
AT5G46230 2.0kb upstream 2.0kb upstream 2000 false Chr5: 18743046-18745045 Arabidopsis thaliana
AT5G46230 2.0kb downstream 2.0kb downstream 2606 true Chr5: 18740440-18743045 Arabidopsis thaliana
AT5G46230 2.0kb downstream 2.0kb downstream 2000 false Chr5: 18740440-18742439 Arabidopsis thaliana
AT5G46230 5.0kb upstream 5.0kb upstream 5606 true Chr5: 18742440-18748045 Arabidopsis thaliana
AT5G46230 5.0kb upstream 5.0kb upstream 5000 false Chr5: 18743046-18748045 Arabidopsis thaliana
AT5G46230 5.0kb downstream 5.0kb downstream 5606 true Chr5: 18737440-18743045 Arabidopsis thaliana
AT5G46230 5.0kb downstream 5.0kb downstream 5000 false Chr5: 18737440-18742439 Arabidopsis thaliana
AT5G46230 10.0kb upstream 10.0kb upstream 10606 true Chr5: 18742440-18753045 Arabidopsis thaliana
AT5G46230 10.0kb upstream 10.0kb upstream 10000 false Chr5: 18743046-18753045 Arabidopsis thaliana
AT5G46230 10.0kb downstream 10.0kb downstream 10606 true Chr5: 18732440-18743045 Arabidopsis thaliana
AT5G46230 10.0kb downstream 10.0kb downstream 10000 false Chr5: 18732440-18742439 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377111 5261 Brassicaceae View MSA
123837834 5264 Brassicales-Malvales View MSA
124346143 5266 SBM View MSA
124239126 5268 Malvidae View MSA
124067274 5270 Rosid View MSA
123752755 5271 Pentapetalae View MSA
122794473 5272 Eudicot View MSA
122046318 5273 Angiosperm View MSA
121348392 5274 Embryophyte View MSA
123380844 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.885       High
cufflinks 8.63        
cufflinks 4.897       Low
cufflinks 10.502        
cufflinks 8.663        
cufflinks 10.742        

0 Strain