Gene : AT5G46100 A. thaliana TAIR10
Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  3991
Name:  ? AT5G46100 Secondary Identifier:  ? PAC:19671122
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G46100 0.5kb upstream 0.5kb upstream 1919 true Chr5: 18694316-18696234 Arabidopsis thaliana
AT5G46100 0.5kb upstream 0.5kb upstream 500 false Chr5: 18695735-18696234 Arabidopsis thaliana
AT5G46100 0.5kb downstream 0.5kb downstream 1919 true Chr5: 18693816-18695734 Arabidopsis thaliana
AT5G46100 0.5kb downstream 0.5kb downstream 500 false Chr5: 18693816-18694315 Arabidopsis thaliana
AT5G46100 1.0kb upstream 1.0kb upstream 2419 true Chr5: 18694316-18696734 Arabidopsis thaliana
AT5G46100 1.0kb upstream 1.0kb upstream 1000 false Chr5: 18695735-18696734 Arabidopsis thaliana
AT5G46100 1.0kb downstream 1.0kb downstream 2419 true Chr5: 18693316-18695734 Arabidopsis thaliana
AT5G46100 1.0kb downstream 1.0kb downstream 1000 false Chr5: 18693316-18694315 Arabidopsis thaliana
AT5G46100 2.0kb upstream 2.0kb upstream 3419 true Chr5: 18694316-18697734 Arabidopsis thaliana
AT5G46100 2.0kb upstream 2.0kb upstream 2000 false Chr5: 18695735-18697734 Arabidopsis thaliana
AT5G46100 2.0kb downstream 2.0kb downstream 3419 true Chr5: 18692316-18695734 Arabidopsis thaliana
AT5G46100 2.0kb downstream 2.0kb downstream 2000 false Chr5: 18692316-18694315 Arabidopsis thaliana
AT5G46100 5.0kb upstream 5.0kb upstream 6419 true Chr5: 18694316-18700734 Arabidopsis thaliana
AT5G46100 5.0kb upstream 5.0kb upstream 5000 false Chr5: 18695735-18700734 Arabidopsis thaliana
AT5G46100 5.0kb downstream 5.0kb downstream 6419 true Chr5: 18689316-18695734 Arabidopsis thaliana
AT5G46100 5.0kb downstream 5.0kb downstream 5000 false Chr5: 18689316-18694315 Arabidopsis thaliana
AT5G46100 10.0kb upstream 10.0kb upstream 11419 true Chr5: 18694316-18705734 Arabidopsis thaliana
AT5G46100 10.0kb upstream 10.0kb upstream 10000 false Chr5: 18695735-18705734 Arabidopsis thaliana
AT5G46100 10.0kb downstream 10.0kb downstream 11419 true Chr5: 18684316-18695734 Arabidopsis thaliana
AT5G46100 10.0kb downstream 10.0kb downstream 10000 false Chr5: 18684316-18694315 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360775 5261 Brassicaceae View MSA
123829227 5264 Brassicales-Malvales View MSA
124346453 5266 SBM View MSA
124252725 5268 Malvidae View MSA
124068933 5270 Rosid View MSA
123750623 5271 Pentapetalae View MSA
122791820 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.741       High
cufflinks 2.984        
cufflinks 2.921        
cufflinks 3.55        
cufflinks 2.835        
cufflinks 3.546        

0 Strain