Gene : OVA2 A. thaliana TAIR10
Primary Identifier:  ? AT5G49030 Defline:  (1 of 1) PTHR11946:SF82 - ISOLEUCINE--TRNA LIGASE, MITOCHONDRIAL
Genomic Order:  4314 Name:  ? AT5G49030
Secondary Identifier:  ? PAC:19672750
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRNA-CHARGING-PWY Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G49030 0.5kb upstream 0.5kb upstream 8854 true Chr5: 19874944-19883797 Arabidopsis thaliana
AT5G49030 0.5kb upstream 0.5kb upstream 500 false Chr5: 19883298-19883797 Arabidopsis thaliana
AT5G49030 0.5kb downstream 0.5kb downstream 8854 true Chr5: 19874444-19883297 Arabidopsis thaliana
AT5G49030 0.5kb downstream 0.5kb downstream 500 false Chr5: 19874444-19874943 Arabidopsis thaliana
AT5G49030 1.0kb upstream 1.0kb upstream 9354 true Chr5: 19874944-19884297 Arabidopsis thaliana
AT5G49030 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19883298-19884297 Arabidopsis thaliana
AT5G49030 1.0kb downstream 1.0kb downstream 9354 true Chr5: 19873944-19883297 Arabidopsis thaliana
AT5G49030 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19873944-19874943 Arabidopsis thaliana
AT5G49030 2.0kb upstream 2.0kb upstream 10354 true Chr5: 19874944-19885297 Arabidopsis thaliana
AT5G49030 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19883298-19885297 Arabidopsis thaliana
AT5G49030 2.0kb downstream 2.0kb downstream 10354 true Chr5: 19872944-19883297 Arabidopsis thaliana
AT5G49030 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19872944-19874943 Arabidopsis thaliana
AT5G49030 5.0kb upstream 5.0kb upstream 13354 true Chr5: 19874944-19888297 Arabidopsis thaliana
AT5G49030 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19883298-19888297 Arabidopsis thaliana
AT5G49030 5.0kb downstream 5.0kb downstream 13354 true Chr5: 19869944-19883297 Arabidopsis thaliana
AT5G49030 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19869944-19874943 Arabidopsis thaliana
AT5G49030 10.0kb upstream 10.0kb upstream 18354 true Chr5: 19874944-19893297 Arabidopsis thaliana
AT5G49030 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19883298-19893297 Arabidopsis thaliana
AT5G49030 10.0kb downstream 10.0kb downstream 18354 true Chr5: 19864944-19883297 Arabidopsis thaliana
AT5G49030 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19864944-19874943 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360799 5261 Brassicaceae View MSA
123829224 5264 Brassicales-Malvales View MSA
124344420 5266 SBM View MSA
124243360 5268 Malvidae View MSA
124064635 5270 Rosid View MSA
123740769 5271 Pentapetalae View MSA
122790755 5272 Eudicot View MSA
122042566 5273 Angiosperm View MSA
121346634 5274 Embryophyte View MSA
123424788 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.645        
cufflinks 1.562        
cufflinks 7.162       High
cufflinks 1.754        
cufflinks 5.342        
cufflinks 1.653        

0 Strain