Gene : AT5G48890 A. thaliana TAIR10
Defline:  C2H2-like zinc finger protein Genomic Order:  4296
Name:  ? AT5G48890 Secondary Identifier:  ? PAC:19670533
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G48890 0.5kb upstream 0.5kb upstream 1022 true Chr5: 19819853-19820874 Arabidopsis thaliana
AT5G48890 0.5kb upstream 0.5kb upstream 500 false Chr5: 19819853-19820352 Arabidopsis thaliana
AT5G48890 0.5kb downstream 0.5kb downstream 1022 true Chr5: 19820353-19821374 Arabidopsis thaliana
AT5G48890 0.5kb downstream 0.5kb downstream 500 false Chr5: 19820875-19821374 Arabidopsis thaliana
AT5G48890 1.0kb upstream 1.0kb upstream 1522 true Chr5: 19819353-19820874 Arabidopsis thaliana
AT5G48890 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19819353-19820352 Arabidopsis thaliana
AT5G48890 1.0kb downstream 1.0kb downstream 1522 true Chr5: 19820353-19821874 Arabidopsis thaliana
AT5G48890 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19820875-19821874 Arabidopsis thaliana
AT5G48890 2.0kb upstream 2.0kb upstream 2522 true Chr5: 19818353-19820874 Arabidopsis thaliana
AT5G48890 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19818353-19820352 Arabidopsis thaliana
AT5G48890 2.0kb downstream 2.0kb downstream 2522 true Chr5: 19820353-19822874 Arabidopsis thaliana
AT5G48890 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19820875-19822874 Arabidopsis thaliana
AT5G48890 5.0kb upstream 5.0kb upstream 5522 true Chr5: 19815353-19820874 Arabidopsis thaliana
AT5G48890 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19815353-19820352 Arabidopsis thaliana
AT5G48890 5.0kb downstream 5.0kb downstream 5522 true Chr5: 19820353-19825874 Arabidopsis thaliana
AT5G48890 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19820875-19825874 Arabidopsis thaliana
AT5G48890 10.0kb upstream 10.0kb upstream 10522 true Chr5: 19810353-19820874 Arabidopsis thaliana
AT5G48890 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19810353-19820352 Arabidopsis thaliana
AT5G48890 10.0kb downstream 10.0kb downstream 10522 true Chr5: 19820353-19830874 Arabidopsis thaliana
AT5G48890 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19820875-19830874 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381433 5261 Brassicaceae View MSA
123840815 5264 Brassicales-Malvales View MSA
124348494 5266 SBM View MSA
124244828 5268 Malvidae View MSA
124063867 5270 Rosid View MSA
123749739 5271 Pentapetalae View MSA
122794818 5272 Eudicot View MSA
122051006 5273 Angiosperm View MSA
121350581 5274 Embryophyte View MSA
123381808 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.434        
cufflinks 0.028     Low Low
cufflinks 0.464        
cufflinks 0.052     Low  
cufflinks 0.396        

0 Strain