Gene : AT5G48960 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12103//PTHR12103:SF15 - CYTOSOLIC PURINE 5-NUCLEOTIDASE-RELATED // PROTEIN Y71H10B.1, ISOFORM C Genomic Order:  4306
Name:  ? AT5G48960 Secondary Identifier:  ? PAC:19671094
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5381 Arabidopsis thaliana pathologic  
Athaliana PWY-5695 Arabidopsis thaliana pathologic  
Athaliana PWY-6596 Arabidopsis thaliana pathologic  
Athaliana PWY-6606 Arabidopsis thaliana pathologic  
Athaliana PWY-6608 Arabidopsis thaliana pathologic  
Athaliana PWY-7185 Arabidopsis thaliana pathologic  
Athaliana SALVADEHYPOX-PWY Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G48960 0.5kb upstream 0.5kb upstream 4522 true Chr5: 19849043-19853564 Arabidopsis thaliana
AT5G48960 0.5kb upstream 0.5kb upstream 500 false Chr5: 19849043-19849542 Arabidopsis thaliana
AT5G48960 0.5kb downstream 0.5kb downstream 4522 true Chr5: 19849543-19854064 Arabidopsis thaliana
AT5G48960 0.5kb downstream 0.5kb downstream 500 false Chr5: 19853565-19854064 Arabidopsis thaliana
AT5G48960 1.0kb upstream 1.0kb upstream 5022 true Chr5: 19848543-19853564 Arabidopsis thaliana
AT5G48960 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19848543-19849542 Arabidopsis thaliana
AT5G48960 1.0kb downstream 1.0kb downstream 5022 true Chr5: 19849543-19854564 Arabidopsis thaliana
AT5G48960 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19853565-19854564 Arabidopsis thaliana
AT5G48960 2.0kb upstream 2.0kb upstream 6022 true Chr5: 19847543-19853564 Arabidopsis thaliana
AT5G48960 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19847543-19849542 Arabidopsis thaliana
AT5G48960 2.0kb downstream 2.0kb downstream 6022 true Chr5: 19849543-19855564 Arabidopsis thaliana
AT5G48960 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19853565-19855564 Arabidopsis thaliana
AT5G48960 5.0kb upstream 5.0kb upstream 9022 true Chr5: 19844543-19853564 Arabidopsis thaliana
AT5G48960 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19844543-19849542 Arabidopsis thaliana
AT5G48960 5.0kb downstream 5.0kb downstream 9022 true Chr5: 19849543-19858564 Arabidopsis thaliana
AT5G48960 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19853565-19858564 Arabidopsis thaliana
AT5G48960 10.0kb upstream 10.0kb upstream 14022 true Chr5: 19839543-19853564 Arabidopsis thaliana
AT5G48960 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19839543-19849542 Arabidopsis thaliana
AT5G48960 10.0kb downstream 10.0kb downstream 14022 true Chr5: 19849543-19863564 Arabidopsis thaliana
AT5G48960 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19853565-19863564 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372227 5261 Brassicaceae View MSA
123831857 5264 Brassicales-Malvales View MSA
124339151 5266 SBM View MSA
124240270 5268 Malvidae View MSA
124068211 5270 Rosid View MSA
123737665 5271 Pentapetalae View MSA
122791643 5272 Eudicot View MSA
122047962 5273 Angiosperm View MSA
121348672 5274 Embryophyte View MSA
123428872 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.841        
cufflinks 11.367        
cufflinks 14.657        
cufflinks 12.035        
cufflinks 15.145       High
cufflinks 8.275       Low

0 Strain