Gene : AT5G48620 A. thaliana TAIR10
Defline:  (1 of 16) PTHR23155//PTHR23155:SF549 - LEUCINE-RICH REPEAT-CONTAINING PROTEIN // DISEASE RESISTANCE RPP8-LIKE PROTEIN 3-RELATED Genomic Order:  4267
Name:  ? AT5G48620 Secondary Identifier:  ? PAC:19667650
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G48620 0.5kb upstream 0.5kb upstream 5477 true Chr5: 19715976-19721452 Arabidopsis thaliana
AT5G48620 0.5kb upstream 0.5kb upstream 500 false Chr5: 19715976-19716475 Arabidopsis thaliana
AT5G48620 0.5kb downstream 0.5kb downstream 5477 true Chr5: 19716476-19721952 Arabidopsis thaliana
AT5G48620 0.5kb downstream 0.5kb downstream 500 false Chr5: 19721453-19721952 Arabidopsis thaliana
AT5G48620 1.0kb upstream 1.0kb upstream 5977 true Chr5: 19715476-19721452 Arabidopsis thaliana
AT5G48620 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19715476-19716475 Arabidopsis thaliana
AT5G48620 1.0kb downstream 1.0kb downstream 5977 true Chr5: 19716476-19722452 Arabidopsis thaliana
AT5G48620 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19721453-19722452 Arabidopsis thaliana
AT5G48620 2.0kb upstream 2.0kb upstream 6977 true Chr5: 19714476-19721452 Arabidopsis thaliana
AT5G48620 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19714476-19716475 Arabidopsis thaliana
AT5G48620 2.0kb downstream 2.0kb downstream 6977 true Chr5: 19716476-19723452 Arabidopsis thaliana
AT5G48620 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19721453-19723452 Arabidopsis thaliana
AT5G48620 5.0kb upstream 5.0kb upstream 9977 true Chr5: 19711476-19721452 Arabidopsis thaliana
AT5G48620 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19711476-19716475 Arabidopsis thaliana
AT5G48620 5.0kb downstream 5.0kb downstream 9977 true Chr5: 19716476-19726452 Arabidopsis thaliana
AT5G48620 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19721453-19726452 Arabidopsis thaliana
AT5G48620 10.0kb upstream 10.0kb upstream 14977 true Chr5: 19706476-19721452 Arabidopsis thaliana
AT5G48620 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19706476-19716475 Arabidopsis thaliana
AT5G48620 10.0kb downstream 10.0kb downstream 14977 true Chr5: 19716476-19731452 Arabidopsis thaliana
AT5G48620 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19721453-19731452 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122338841 5261 Brassicaceae View MSA
123841861 5264 Brassicales-Malvales View MSA
124323080 5266 SBM View MSA
124253634 5268 Malvidae View MSA
124074947 5270 Rosid View MSA
123753572 5271 Pentapetalae View MSA
122797897 5272 Eudicot View MSA
122051706 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 43.964     High High
cufflinks 6.151        
cufflinks 30.451     High  
cufflinks 7.537        
cufflinks 29.998     High  
cufflinks 4.0       Low

0 Strain