Gene : HINT3 A. thaliana TAIR10
Primary Identifier:  ? AT5G48545 Defline:  (1 of 1) PTHR23089:SF7 - HIT FAMILY PROTEIN 1
Genomic Order:  4256 Name:  ? AT5G48545
Secondary Identifier:  ? PAC:19665562
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G48545 0.5kb upstream 0.5kb upstream 2493 true Chr5: 19675617-19678109 Arabidopsis thaliana
AT5G48545 0.5kb upstream 0.5kb upstream 500 false Chr5: 19675617-19676116 Arabidopsis thaliana
AT5G48545 0.5kb downstream 0.5kb downstream 2493 true Chr5: 19676117-19678609 Arabidopsis thaliana
AT5G48545 0.5kb downstream 0.5kb downstream 500 false Chr5: 19678110-19678609 Arabidopsis thaliana
AT5G48545 1.0kb upstream 1.0kb upstream 2993 true Chr5: 19675117-19678109 Arabidopsis thaliana
AT5G48545 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19675117-19676116 Arabidopsis thaliana
AT5G48545 1.0kb downstream 1.0kb downstream 2993 true Chr5: 19676117-19679109 Arabidopsis thaliana
AT5G48545 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19678110-19679109 Arabidopsis thaliana
AT5G48545 2.0kb upstream 2.0kb upstream 3993 true Chr5: 19674117-19678109 Arabidopsis thaliana
AT5G48545 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19674117-19676116 Arabidopsis thaliana
AT5G48545 2.0kb downstream 2.0kb downstream 3993 true Chr5: 19676117-19680109 Arabidopsis thaliana
AT5G48545 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19678110-19680109 Arabidopsis thaliana
AT5G48545 5.0kb upstream 5.0kb upstream 6993 true Chr5: 19671117-19678109 Arabidopsis thaliana
AT5G48545 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19671117-19676116 Arabidopsis thaliana
AT5G48545 5.0kb downstream 5.0kb downstream 6993 true Chr5: 19676117-19683109 Arabidopsis thaliana
AT5G48545 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19678110-19683109 Arabidopsis thaliana
AT5G48545 10.0kb upstream 10.0kb upstream 11993 true Chr5: 19666117-19678109 Arabidopsis thaliana
AT5G48545 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19666117-19676116 Arabidopsis thaliana
AT5G48545 10.0kb downstream 10.0kb downstream 11993 true Chr5: 19676117-19688109 Arabidopsis thaliana
AT5G48545 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19678110-19688109 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366357 5261 Brassicaceae View MSA
123839623 5264 Brassicales-Malvales View MSA
124340837 5266 SBM View MSA
124239363 5268 Malvidae View MSA
124050328 5270 Rosid View MSA
123747723 5271 Pentapetalae View MSA
122788071 5272 Eudicot View MSA
122049116 5273 Angiosperm View MSA
121311254 5274 Embryophyte View MSA
123425482 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.198        
cufflinks 3.604        
cufflinks 11.219       High
cufflinks 4.268        
cufflinks 7.81        
cufflinks 3.033       Low

0 Strain