Gene : AT5G48590 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31808//PTHR31808:SF2 - FAMILY NOT NAMED // F21O3.2 PROTEIN-RELATED Genomic Order:  4262
Name:  ? AT5G48590 Secondary Identifier:  ? PAC:19671462
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G48590 0.5kb upstream 0.5kb upstream 2041 true Chr5: 19697907-19699947 Arabidopsis thaliana
AT5G48590 0.5kb upstream 0.5kb upstream 500 false Chr5: 19697907-19698406 Arabidopsis thaliana
AT5G48590 0.5kb downstream 0.5kb downstream 2041 true Chr5: 19698407-19700447 Arabidopsis thaliana
AT5G48590 0.5kb downstream 0.5kb downstream 500 false Chr5: 19699948-19700447 Arabidopsis thaliana
AT5G48590 1.0kb upstream 1.0kb upstream 2541 true Chr5: 19697407-19699947 Arabidopsis thaliana
AT5G48590 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19697407-19698406 Arabidopsis thaliana
AT5G48590 1.0kb downstream 1.0kb downstream 2541 true Chr5: 19698407-19700947 Arabidopsis thaliana
AT5G48590 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19699948-19700947 Arabidopsis thaliana
AT5G48590 2.0kb upstream 2.0kb upstream 3541 true Chr5: 19696407-19699947 Arabidopsis thaliana
AT5G48590 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19696407-19698406 Arabidopsis thaliana
AT5G48590 2.0kb downstream 2.0kb downstream 3541 true Chr5: 19698407-19701947 Arabidopsis thaliana
AT5G48590 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19699948-19701947 Arabidopsis thaliana
AT5G48590 5.0kb upstream 5.0kb upstream 6541 true Chr5: 19693407-19699947 Arabidopsis thaliana
AT5G48590 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19693407-19698406 Arabidopsis thaliana
AT5G48590 5.0kb downstream 5.0kb downstream 6541 true Chr5: 19698407-19704947 Arabidopsis thaliana
AT5G48590 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19699948-19704947 Arabidopsis thaliana
AT5G48590 10.0kb upstream 10.0kb upstream 11541 true Chr5: 19688407-19699947 Arabidopsis thaliana
AT5G48590 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19688407-19698406 Arabidopsis thaliana
AT5G48590 10.0kb downstream 10.0kb downstream 11541 true Chr5: 19698407-19709947 Arabidopsis thaliana
AT5G48590 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19699948-19709947 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361461 5261 Brassicaceae View MSA
123798178 5264 Brassicales-Malvales View MSA
124295850 5266 SBM View MSA
124250371 5268 Malvidae View MSA
124063966 5270 Rosid View MSA
123742613 5271 Pentapetalae View MSA
122790300 5272 Eudicot View MSA
122047287 5273 Angiosperm View MSA
121310722 5274 Embryophyte View MSA
123428654 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.306     High  
cufflinks 5.264       Low
cufflinks 28.84     High  
cufflinks 7.236        
cufflinks 30.395     High  
cufflinks 5.488        

0 Strain