Gene : AT5G48520 A. thaliana TAIR10
Defline:  (1 of 1) PTHR19378 - GOLGIN- RELATED Genomic Order:  4252
Name:  ? AT5G48520 Secondary Identifier:  ? PAC:19671721
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G48520 0.5kb upstream 0.5kb upstream 5724 true Chr5: 19660713-19666436 Arabidopsis thaliana
AT5G48520 0.5kb upstream 0.5kb upstream 500 false Chr5: 19660713-19661212 Arabidopsis thaliana
AT5G48520 0.5kb downstream 0.5kb downstream 5724 true Chr5: 19661213-19666936 Arabidopsis thaliana
AT5G48520 0.5kb downstream 0.5kb downstream 500 false Chr5: 19666437-19666936 Arabidopsis thaliana
AT5G48520 1.0kb upstream 1.0kb upstream 6224 true Chr5: 19660213-19666436 Arabidopsis thaliana
AT5G48520 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19660213-19661212 Arabidopsis thaliana
AT5G48520 1.0kb downstream 1.0kb downstream 6224 true Chr5: 19661213-19667436 Arabidopsis thaliana
AT5G48520 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19666437-19667436 Arabidopsis thaliana
AT5G48520 2.0kb upstream 2.0kb upstream 7224 true Chr5: 19659213-19666436 Arabidopsis thaliana
AT5G48520 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19659213-19661212 Arabidopsis thaliana
AT5G48520 2.0kb downstream 2.0kb downstream 7224 true Chr5: 19661213-19668436 Arabidopsis thaliana
AT5G48520 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19666437-19668436 Arabidopsis thaliana
AT5G48520 5.0kb upstream 5.0kb upstream 10224 true Chr5: 19656213-19666436 Arabidopsis thaliana
AT5G48520 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19656213-19661212 Arabidopsis thaliana
AT5G48520 5.0kb downstream 5.0kb downstream 10224 true Chr5: 19661213-19671436 Arabidopsis thaliana
AT5G48520 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19666437-19671436 Arabidopsis thaliana
AT5G48520 10.0kb upstream 10.0kb upstream 15224 true Chr5: 19651213-19666436 Arabidopsis thaliana
AT5G48520 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19651213-19661212 Arabidopsis thaliana
AT5G48520 10.0kb downstream 10.0kb downstream 15224 true Chr5: 19661213-19676436 Arabidopsis thaliana
AT5G48520 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19666437-19676436 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370060 5261 Brassicaceae View MSA
123830459 5264 Brassicales-Malvales View MSA
124336962 5266 SBM View MSA
124243680 5268 Malvidae View MSA
124050223 5270 Rosid View MSA
123749883 5271 Pentapetalae View MSA
122791624 5272 Eudicot View MSA
122046057 5273 Angiosperm View MSA
121345822 5274 Embryophyte View MSA
123380274 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.992        
cufflinks 5.964        
cufflinks 2.315       Low
cufflinks 5.573        
cufflinks 2.549        
cufflinks 6.405       High

0 Strain