Gene : BIR1 A. thaliana TAIR10
Primary Identifier:  ? AT5G48380 Defline:  (1 of 14) PF07714//PF08263 - Protein tyrosine kinase (Pkinase_Tyr) // Leucine rich repeat N-terminal domain (LRRNT_2)
Genomic Order:  4235 Name:  ? AT5G48380
Secondary Identifier:  ? PAC:19672369
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G48380 0.5kb upstream 0.5kb upstream 3471 true Chr5: 19604089-19607559 Arabidopsis thaliana
AT5G48380 0.5kb upstream 0.5kb upstream 500 false Chr5: 19607060-19607559 Arabidopsis thaliana
AT5G48380 0.5kb downstream 0.5kb downstream 3471 true Chr5: 19603589-19607059 Arabidopsis thaliana
AT5G48380 0.5kb downstream 0.5kb downstream 500 false Chr5: 19603589-19604088 Arabidopsis thaliana
AT5G48380 1.0kb upstream 1.0kb upstream 3971 true Chr5: 19604089-19608059 Arabidopsis thaliana
AT5G48380 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19607060-19608059 Arabidopsis thaliana
AT5G48380 1.0kb downstream 1.0kb downstream 3971 true Chr5: 19603089-19607059 Arabidopsis thaliana
AT5G48380 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19603089-19604088 Arabidopsis thaliana
AT5G48380 2.0kb upstream 2.0kb upstream 4971 true Chr5: 19604089-19609059 Arabidopsis thaliana
AT5G48380 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19607060-19609059 Arabidopsis thaliana
AT5G48380 2.0kb downstream 2.0kb downstream 4971 true Chr5: 19602089-19607059 Arabidopsis thaliana
AT5G48380 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19602089-19604088 Arabidopsis thaliana
AT5G48380 5.0kb upstream 5.0kb upstream 7971 true Chr5: 19604089-19612059 Arabidopsis thaliana
AT5G48380 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19607060-19612059 Arabidopsis thaliana
AT5G48380 5.0kb downstream 5.0kb downstream 7971 true Chr5: 19599089-19607059 Arabidopsis thaliana
AT5G48380 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19599089-19604088 Arabidopsis thaliana
AT5G48380 10.0kb upstream 10.0kb upstream 12971 true Chr5: 19604089-19617059 Arabidopsis thaliana
AT5G48380 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19607060-19617059 Arabidopsis thaliana
AT5G48380 10.0kb downstream 10.0kb downstream 12971 true Chr5: 19594089-19607059 Arabidopsis thaliana
AT5G48380 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19594089-19604088 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378108 5261 Brassicaceae View MSA
123837788 5264 Brassicales-Malvales View MSA
124345844 5266 SBM View MSA
124254343 5268 Malvidae View MSA
124071838 5270 Rosid View MSA
123750976 5271 Pentapetalae View MSA
122795298 5272 Eudicot View MSA
122046399 5273 Angiosperm View MSA
121346190 5274 Embryophyte View MSA
123380345 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 109.279     High High
cufflinks 39.414     High  
cufflinks 48.971     High  
cufflinks 34.412     High  
cufflinks 55.912     High  
cufflinks 38.492     High  

0 Strain